View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2089R-Insertion-2 (Length: 965)

Name: NF2089R-Insertion-2
Description: NF2089R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2089R-Insertion-2
NF2089R-Insertion-2
[»] chr5 (7 HSPs)
chr5 (9-964)||(7717088-7718037)
chr5 (643-678)||(26605401-26605436)
chr5 (637-678)||(7951771-7951812)
chr5 (637-678)||(8100179-8100220)
chr5 (637-678)||(14570676-14570717)
chr5 (637-678)||(17592587-17592628)
chr5 (637-678)||(25600845-25600886)
[»] chr8 (15 HSPs)
chr8 (637-677)||(45425243-45425283)
chr8 (637-678)||(4631339-4631380)
chr8 (637-678)||(21137066-21137107)
chr8 (638-679)||(31846281-31846322)
chr8 (637-681)||(13568692-13568736)
chr8 (643-678)||(2152026-2152061)
chr8 (647-681)||(37296208-37296242)
chr8 (637-678)||(11113992-11114033)
chr8 (637-678)||(12255305-12255346)
chr8 (637-678)||(12260848-12260889)
chr8 (637-678)||(28864293-28864334)
chr8 (637-678)||(36176888-36176929)
chr8 (637-678)||(36245698-36245739)
chr8 (637-678)||(39112547-39112588)
chr8 (637-678)||(44502833-44502874)
[»] scaffold0066 (1 HSPs)
scaffold0066 (637-678)||(34313-34354)
[»] chr4 (8 HSPs)
chr4 (637-678)||(2615729-2615770)
chr4 (644-681)||(3168218-3168255)
chr4 (643-678)||(4416181-4416216)
chr4 (643-678)||(6083500-6083535)
chr4 (643-678)||(39184487-39184522)
chr4 (643-681)||(53910349-53910387)
chr4 (637-678)||(9328025-9328066)
chr4 (637-678)||(33501714-33501755)
[»] chr2 (4 HSPs)
chr2 (643-680)||(7455848-7455885)
chr2 (637-678)||(16108261-16108302)
chr2 (637-678)||(16669837-16669878)
chr2 (637-678)||(23789179-23789220)
[»] chr7 (10 HSPs)
chr7 (637-681)||(47534686-47534730)
chr7 (643-678)||(9303866-9303901)
chr7 (638-677)||(10538917-10538956)
chr7 (637-678)||(17491726-17491767)
chr7 (637-678)||(17561447-17561488)
chr7 (637-678)||(20075057-20075098)
chr7 (637-678)||(21295361-21295402)
chr7 (637-678)||(34012304-34012345)
chr7 (637-678)||(41002940-41002981)
chr7 (637-678)||(44547637-44547678)
[»] chr3 (7 HSPs)
chr3 (637-677)||(1572540-1572580)
chr3 (643-677)||(41824324-41824358)
chr3 (637-678)||(1641885-1641926)
chr3 (637-678)||(25916613-25916654)
chr3 (637-678)||(39952481-39952522)
chr3 (637-678)||(44543992-44544033)
chr3 (637-678)||(54849574-54849615)
[»] chr1 (6 HSPs)
chr1 (637-681)||(13698821-13698865)
chr1 (637-681)||(47263668-47263712)
chr1 (637-678)||(15616346-15616387)
chr1 (637-678)||(18237302-18237343)
chr1 (637-678)||(31635916-31635957)
chr1 (637-678)||(37951735-37951776)
[»] chr6 (3 HSPs)
chr6 (636-678)||(15287347-15287389)
chr6 (637-678)||(345078-345119)
chr6 (637-678)||(12105849-12105890)
[»] scaffold0122 (1 HSPs)
scaffold0122 (637-678)||(12274-12315)
[»] scaffold0121 (1 HSPs)
scaffold0121 (637-678)||(24417-24458)
[»] scaffold0012 (1 HSPs)
scaffold0012 (637-678)||(47850-47891)


Alignment Details
Target: chr5 (Bit Score: 772; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 9 - 964
Target Start/End: Original strand, 7717088 - 7718037
Alignment:
Q  9 gcatcatgcacgctcaccctcgttttcggtttgtacattagtactagtatcttttgaatccaatgaaaatcaaatggatattataatttaagcaaatcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7717088 gcatcatgcacgctcaccctcgttttcggtttgtacattagtactagtatcttttgaatccaatgaaaatcaaatggatattatattttaagcaaatcct 7717187  T
Q  109 agattgagaaatactccaaacatagggagaacttaaaattatttttgattgagtatttaaagagatttaatcaaatggatattatgatttaaactaaata 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7717188 agattgagaaatactccaaacatagggagaacttaaaatcatttttgattgaatatttaaagagatttaatcaaatggatattatgatttaaactaaata 7717287  T
Q  209 aattaaacaaacaaactttgatttcttataaaagaatttaatttaaagagagatatacgtaaaaataagttaaatctcgctatcaagtgagtttcattat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7717288 aattaaacaaacaaactttgatttcttataaaagaatttaatttaaagagagatatatgtaaaaataagttaaatctcgctatcaagtgagtttcattat 7717387  T
Q  309 catcaatttatattta--------taaatttgtatatgtgtacatctcttcatatagaatcattcatttcgaatcatttatttctttgagaaatgtagag 400  Q
    ||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||              ||||||||||| ||||    
T  7717388 catcaatttatatttaaatatttataagtttgtatatgtgtacatctcttcatatagaatcattcatttc--------------tttgagaaatgcagag 7717473  T
Q  401 accgtaacttcacattttcagacaatatagttcccacaaattattagtcttaaagatttgtattagatttcttttttcgaccctaacacacaaggattag 500  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7717474 accctaacttcacattttcagacaatatagttcccacaaattattagtcttaaagatttgtattagatttctttt-tcgaccctaacacacaaggattag 7717572  T
Q  501 ctgtgaatgtagccgtcctaactaatttataggttattacattagctttctaataatttgttattttattcctaattcggactcttataagatttatcat 600  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  7717573 ctgtgaatgtagccgtcctagctaatttataggttattacattagctttctaataatttgttattttattcctaatacggattcttataagatttatcat 7717672  T
Q  601 gtattacatccctccttaattataagaccggtttaagattataaacaactttaatataaatatcaactttcttaattctcggtaaaatggtcttatacac 700  Q
    ||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7717673 gtattacctccttccttaattataagaccgatttaaaattacaaacaactttaatataaatatcaactttcttaattctcggtaaaatggtattatacac 7717772  T
Q  701 ggggacggaggaagtaaattgtaggatcatttatgagacccatttgcaaaacaatgagatacatatgaaccttaacctaatnnnnnnngtgttgataacg 800  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |    
T  7717773 tgggatggaggaagtaaattgtaggatcatttatgagacccatttgcaaaacaatgagatacatatgaaccttaacctaataaaaaaagtgttgataatg 7717872  T
Q  801 taatgtaacgtgaattgatttcttggggtaatgaattgtactagtttaaatttgatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcg 900  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7717873 taatgtaacgtgaattggtttcttggggtaatgaattgtactagtttaaatttgatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcg 7717972  T
Q  901 gtggtcgtcccgtttgtcgaactgtg-tttttcatcaatctcaatacgatctgattctttactct 964  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7717973 gtggtcgtcccgtttgtcgaactgtgttttttcatcaatctcaatacgatctgattctttactct 7718037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Complemental strand, 26605436 - 26605401
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  26605436 aaacaactttaatataaatatccactttcttaattc 26605401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 7951771 - 7951812
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  7951771 gattacaaacaactttaatacaaatatccactttcttaattc 7951812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 8100220 - 8100179
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||| ||||||| |||||||||||||||||||||    
T  8100220 gattacaaacaaatttaatacaaatatcaactttcttaattc 8100179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 14570717 - 14570676
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||| ||||||| || ||||||||||    
T  14570717 gattataaacaactttaatacaaatatccaccttcttaattc 14570676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 17592628 - 17592587
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  17592628 gattacaaacaactttaatacaaatatccactttcttaattc 17592587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 25600886 - 25600845
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  25600886 gattacaaacaactttaatataaatatccactatcttaattc 25600845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 677
Target Start/End: Original strand, 45425243 - 45425283
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaatt 677  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  45425243 gattacaaacaactttaatataaatatcaactttcttaatt 45425283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 4631380 - 4631339
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  4631380 gattacaaacaactttaatataaatatccactttcttaattc 4631339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 21137066 - 21137107
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  21137066 gattacaaacaactttaatacaaatatcaactttcttaattc 21137107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 679
Target Start/End: Complemental strand, 31846322 - 31846281
Alignment:
Q  638 attataaacaactttaatataaatatcaactttcttaattct 679  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  31846322 attacaaacaactttaatataaatatcaactttctaaattct 31846281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 13568736 - 13568692
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattctcg 681  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||    
T  13568736 gattacaaacaactttaatataaatatctgctttcttaattctcg 13568692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Complemental strand, 2152061 - 2152026
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  2152061 aaacaactttaatataaatatccactttcttaattc 2152026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 647 - 681
Target Start/End: Original strand, 37296208 - 37296242
Alignment:
Q  647 aactttaatataaatatcaactttcttaattctcg 681  Q
    |||||||||| ||||||||||||||||||||||||    
T  37296208 aactttaatacaaatatcaactttcttaattctcg 37296242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 11113992 - 11114033
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  11113992 gattacaaacaactttaatataaatatgaacttttttaattc 11114033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 12255305 - 12255346
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  12255305 gattacaaacaactttaatacaaatatccactttcttaattc 12255346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 12260848 - 12260889
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  12260848 gattacaaacaactttaatacaaatatccactttcttaattc 12260889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 28864334 - 28864293
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  28864334 gattacaaacaactttaatacaaatatccactttcttaattc 28864293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 36176929 - 36176888
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||| ||||||| ||| |||||||||    
T  36176929 gattataaacaactttaatacaaatatccactatcttaattc 36176888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 36245739 - 36245698
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  36245739 gattagaaacaactttaatacaaatatccactttcttaattc 36245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 39112588 - 39112547
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| |||||||||||||||| ||||    
T  39112588 gattacaaacaactttaatacaaatatcaactttcttcattc 39112547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 44502833 - 44502874
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  44502833 gattacaaacaactttaatacaaatatccactttcttaattc 44502874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 34313 - 34354
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  34313 gattacaaacaactttaatataaatatccactttcttaattc 34354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 2615770 - 2615729
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  2615770 gattacaaacaactttaatacaaatatcaactttcttaattc 2615729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 681
Target Start/End: Complemental strand, 3168255 - 3168218
Alignment:
Q  644 aacaactttaatataaatatcaactttcttaattctcg 681  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3168255 aacaattttaatataaatatcaactttcttaattctcg 3168218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 4416181 - 4416216
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  4416181 aaacaactttaatataaatatccactttcttaattc 4416216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 6083500 - 6083535
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  6083500 aaacaactttaatataaatatccactttcttaattc 6083535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 39184487 - 39184522
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  39184487 aaacaactttaatataaatatccactttcttaattc 39184522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 643 - 681
Target Start/End: Original strand, 53910349 - 53910387
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattctcg 681  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  53910349 aaacaactttaatgcaaatatcaactttcttaattctcg 53910387  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 9328066 - 9328025
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  9328066 gattacaaacaactttaatacaaatatcaactatcttaattc 9328025  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 33501755 - 33501714
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  33501755 gattacaaacaactttaatacaaatatcaactatcttaattc 33501714  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 680
Target Start/End: Complemental strand, 7455885 - 7455848
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattctc 680  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7455885 aaacaactttaatataaatatcaattttcttaattctc 7455848  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 16108302 - 16108261
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  16108302 gattacaaacaactttaatacaaatatccactttcttaattc 16108261  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 16669837 - 16669878
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  16669837 gattacaaacaactttaatacaaatatcaactatcttaattc 16669878  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 23789179 - 23789220
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  23789179 gattacaaacaactttaatacaaatatccactttcttaattc 23789220  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 47534730 - 47534686
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattctcg 681  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||    
T  47534730 gattacaaacaactttaatacaaatatccactttcttaattctcg 47534686  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 9303866 - 9303901
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||||| |||||||||||||    
T  9303866 aaacaactttaatataaatatccactttcttaattc 9303901  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 677
Target Start/End: Complemental strand, 10538956 - 10538917
Alignment:
Q  638 attataaacaactttaatataaatatcaactttcttaatt 677  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  10538956 attacaaacaactttaatacaaatatcaactttcttaatt 10538917  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 17491726 - 17491767
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||| ||||||| ||| |||||||||    
T  17491726 gattataaacaactttaatacaaatatccactatcttaattc 17491767  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 17561488 - 17561447
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||| ||||||| ||| |||||||||    
T  17561488 gattataaacaactttaatacaaatatccactatcttaattc 17561447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 20075057 - 20075098
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  20075057 gattacaaacaactttaatataaatattcactttcttaattc 20075098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 21295361 - 21295402
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  21295361 gattacaaacaactttaatacaaatatccactttcttaattc 21295402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 34012345 - 34012304
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  34012345 gattacaaacaactttaatacaaatatctactttcttaattc 34012304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 41002981 - 41002940
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  41002981 gattacaaacaactttaatacaaatatccactttcttaattc 41002940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 44547637 - 44547678
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  44547637 gattacaaacaactttaatataaatatccactatcttaattc 44547678  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 677
Target Start/End: Original strand, 1572540 - 1572580
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaatt 677  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  1572540 gattacaaacaactttaatataaatatcaattttcttaatt 1572580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 643 - 677
Target Start/End: Original strand, 41824324 - 41824358
Alignment:
Q  643 aaacaactttaatataaatatcaactttcttaatt 677  Q
    |||||||||||||||||||||| ||||||||||||    
T  41824324 aaacaactttaatataaatatccactttcttaatt 41824358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 1641926 - 1641885
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  1641926 gattacaaacaactttaatataaatatctactatcttaattc 1641885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 25916613 - 25916654
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  25916613 gattacaaacaactttaatacaaatatccactttcttaattc 25916654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 39952481 - 39952522
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  39952481 gattacaaacaactttaatacaaatatccactttcttaattc 39952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 44543992 - 44544033
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  44543992 gattacaaacaactttaatacaaatatccactttcttaattc 44544033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 54849574 - 54849615
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| ||||||||||||| |||||||| |||||||||||||    
T  54849574 gattacaaacaactttaatgtaaatatccactttcttaattc 54849615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 681
Target Start/End: Original strand, 13698821 - 13698865
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattctcg 681  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||    
T  13698821 gattacaaacaactttaatacaaatatccactttcttaattctcg 13698865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 681
Target Start/End: Original strand, 47263668 - 47263712
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattctcg 681  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||    
T  47263668 gattacaaacaactttaatacaaatatccactttcttaattctcg 47263712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 15616346 - 15616387
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| ||||||||||||||||| |||| |||||||||||||    
T  15616346 gattacaaacaactttaatataattatccactttcttaattc 15616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 18237302 - 18237343
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  18237302 gattacaaacaactttaatacaaatatccactttcttaattc 18237343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 31635957 - 31635916
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
T  31635957 gattataaacaactttaatacaaatattcactttcttaattc 31635916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 37951776 - 37951735
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  37951776 gattacaaacaactttaatacaaatatccactttcttaattc 37951735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 636 - 678
Target Start/End: Original strand, 15287347 - 15287389
Alignment:
Q  636 agattataaacaactttaatataaatatcaactttcttaattc 678  Q
    |||||| |||||||||||||| ||||||| |||||||||||||    
T  15287347 agattacaaacaactttaatacaaatatccactttcttaattc 15287389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 345078 - 345119
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| ||||||||||||||||||||||  ||||||||||||    
T  345078 gattacaaacaactttaatataaatatctgctttcttaattc 345119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 12105890 - 12105849
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  12105890 gattacaaacaactttaatataaatatccactatcttaattc 12105849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 12274 - 12315
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  12274 gattacaaacaactttaatacaaatatccactttcttaattc 12315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Complemental strand, 24458 - 24417
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  24458 gattacaaacaactttaatataaatatccactatcttaattc 24417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 678
Target Start/End: Original strand, 47850 - 47891
Alignment:
Q  637 gattataaacaactttaatataaatatcaactttcttaattc 678  Q
    ||||| |||||||||||||| ||||||| |||||||||||||    
T  47850 gattacaaacaactttaatacaaatatccactttcttaattc 47891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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