View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089R-Insertion-3 (Length: 710)
Name: NF2089R-Insertion-3
Description: NF2089R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089R-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 9 - 687
Target Start/End: Complemental strand, 45200784 - 45200108
Alignment:
| Q |
9 |
agaatcacgatgagtcattgtgattttggtaaaagccatgcatagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacat |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||||| |
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| T |
45200784 |
agaatcacgatgagtcattgtgattttggtaaaagccatacttagcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacat |
45200685 |
T |
|
| Q |
109 |
tttattttttacaatctatgaataacagacattgacatgtcgacaacaataatcaattgtcggtgtggtgttgatgtccgacactaagatgtgttggaca |
208 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45200684 |
tttatttgttacaatctatgaataacagacattgacatgtcgacaacaataatcatttgtcggtgtggtgttgatgtccgacactgagatgtgttggaca |
45200585 |
T |
|
| Q |
209 |
ccatacatgcatttgatcagaagtgtcgatgctacaaatgttataagttatatattcattcatttttgttgttattaaaaagcaatgtggttgatttgca |
308 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200584 |
ccatacatacattcgatcagaagtgtcgatgctacaaatgttataagttatat--tcattcatttttgttgttattaaaaagcaatgtggttgatttgca |
45200487 |
T |
|
| Q |
309 |
ggagagaatccctgttgatgaagtgtttcgagaattgaattgtactaaagaaggtctcactaatgatgaaggccaaaagagattggaagtttttggacca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200486 |
ggagagaatccctgttgatgaagtgtttcgagaattgaattgtactaaagaaggtctcactaatgatgaaggccaaaagagattggaagtttttggacca |
45200387 |
T |
|
| Q |
409 |
aacaaattggaagaaaagaaggtaatcatcaatccatcatgcaactaatctataattgcatttttacaaaatttcttaattcataacaatgactaatctt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45200386 |
aacaaattggaagaaaagaaggtaatcatcaatccatcatgcaactaatctataattgcatttttacaaaatttcttaattcataacaatgactaatctt |
45200287 |
T |
|
| Q |
509 |
aattaatttgcactcaaacaggaaagcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggcta |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200286 |
aattaatttgcactcaaacaggaaagcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggcta |
45200187 |
T |
|
| Q |
609 |
ttgcattggcaaatggaggggtacgttcttcatatgattaggctattacatggctattgttatatttgatttgcttatg |
687 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45200186 |
ttgcattggcaaatggaggggtacgttcttcatatgattaggctattacatggctattgttatatttgatttgcttatg |
45200108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 631
Target Start/End: Complemental strand, 21983293 - 21983195
Alignment:
| Q |
533 |
agcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggta |
631 |
Q |
| |
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|||||| |||| || || ||||| |||||||||||||| | |||||||||||||| || ||||| |||||||| |||| |||||| |||||||||||| |
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| T |
21983293 |
agcaaactcctcaagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatggaggggta |
21983195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 527 - 633
Target Start/End: Original strand, 3151583 - 3151689
Alignment:
| Q |
527 |
caggaaagcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggag |
626 |
Q |
| |
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||||||||||| || |||| || ||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||||| |
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| T |
3151583 |
caggaaagcaagtttttgaagtttttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatggag |
3151682 |
T |
|
| Q |
627 |
gggtacg |
633 |
Q |
| |
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| ||||| |
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|
| T |
3151683 |
gagtacg |
3151689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 23585733 - 23585692
Alignment:
| Q |
54 |
cttcaacaaaatcatgatgtcaccgtgattttgacaaactca |
95 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||| |
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|
| T |
23585733 |
cttcaacaaaatcatgttgtcactgtgattttgtcaaactca |
23585692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 27870946 - 27870987
Alignment:
| Q |
55 |
ttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
96 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
27870946 |
ttcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 625
Target Start/End: Complemental strand, 1499371 - 1499297
Alignment:
| Q |
551 |
ttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgga |
625 |
Q |
| |
|
||||| |||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| ||||| |||||| |
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|
| T |
1499371 |
ttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggccattgctttggctaatgga |
1499297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 624
Target Start/End: Original strand, 1459378 - 1459445
Alignment:
| Q |
557 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
624 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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|
| T |
1459378 |
tttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
1459445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 631
Target Start/End: Complemental strand, 48439864 - 48439763
Alignment:
| Q |
530 |
gaaagcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggagggg |
629 |
Q |
| |
|
|||||||| || || ||||||||||| || ||||||||||| || |||||||| ||||| | |||||| | ||||| |||| ||||||||||||||||| |
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|
| T |
48439864 |
gaaagcaagttacttaaattcttgggtttcatgtggaatccactatcatgggttatggaggttgctgcccttatggccattggattggcaaatggagggg |
48439765 |
T |
|
| Q |
630 |
ta |
631 |
Q |
| |
|
|| |
|
|
| T |
48439764 |
ta |
48439763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 630
Target Start/End: Original strand, 44529646 - 44529733
Alignment:
| Q |
543 |
tgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggt |
630 |
Q |
| |
|
||||||| |||| |||||||||||||| || || ||||| ||||| || |||||||| |||||||||||| | |||||||||||||| |
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| T |
44529646 |
tgaaatttctgggatttatgtggaatcctctttcttgggttatggaggcagctgctataatggctattgcacttgcaaatggaggggt |
44529733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 624
Target Start/End: Original strand, 50273336 - 50273431
Alignment:
| Q |
529 |
ggaaagcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
624 |
Q |
| |
|
||||||||| || |||| ||||| || |||||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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| T |
50273336 |
ggaaagcaagtttttgaagttcttaggatttatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
50273431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 627
Target Start/End: Complemental strand, 975676 - 975606
Alignment:
| Q |
557 |
tttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggagg |
627 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
975676 |
tttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattgctatggcacatggagg |
975606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 26787234 - 26787315
Alignment:
| Q |
543 |
tgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatgg |
624 |
Q |
| |
|
||||||| ||||| ||||||||||| || | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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|
| T |
26787234 |
tgaaatttttgggttttatgtggaaccctttatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
26787315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 7873108 - 7873062
Alignment:
| Q |
50 |
atagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
96 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||| |
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|
| T |
7873108 |
atagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac |
7873062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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