View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089R-Insertion-6 (Length: 261)
Name: NF2089R-Insertion-6
Description: NF2089R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089R-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 38094824 - 38095079
Alignment:
| Q |
9 |
cataatttggctaccactactggggtggttaactcgttgctaat-aaaacactacaagaatgttagtaagagattaataacgtttcaaatttcaattgac |
107 |
Q |
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| T |
38094824 |
cataatttggctaccactactggggtggttaactcgttgctaattaaaacactacaagaatgttagtaagagattaataacgtttcaaatttcaattgac |
38094923 |
T |
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| Q |
108 |
atcaattcacatggatttcgcacctacattcaattcacatcatca---tcttcttcttctaaattaacaaatttatcttgattttacatcttgcatcatt |
204 |
Q |
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| T |
38094924 |
atcaattcacatggatttcacacctacattcaattcacatcatcatcttcttcttcttctaaattaacaaatttctctt-attttacatcttgcatcatt |
38095022 |
T |
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| Q |
205 |
ggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatt |
261 |
Q |
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| T |
38095023 |
ggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatt |
38095079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 26179214 - 26179322
Alignment:
| Q |
9 |
cataatttggctaccactactggggtggttaactcgttgctaat-aaaacactacaagaatgttagtaagagattaataacgtttcaaatttcaattgac |
107 |
Q |
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| T |
26179214 |
cataatttggctaccactactggggtggttaactcgttgctaattaaaacactacaagaatgttagtaagagattaataacgtttcaaatttcaattgac |
26179313 |
T |
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| Q |
108 |
atcaattca |
116 |
Q |
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| T |
26179314 |
atcaattca |
26179322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 2758176 - 2758091
Alignment:
| Q |
166 |
aattaacaaatttatcttgattttacatcttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgattt |
252 |
Q |
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| T |
2758176 |
aattaacaaatttctcttgattttacatat-gcagcattgatttcaacaatatatgctgctaatgagttcatattttcaatcgattt |
2758091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 2758399 - 2758317
Alignment:
| Q |
12 |
aatttggctaccactac-tggggtggttaactcgttgctaat-aaaacactacaagaatgttagtaagagattaataacgtttc |
93 |
Q |
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| T |
2758399 |
aattttgctaccactacctggggtggttaactcactgataattaaaacactacaagaatgtta-ttagagattgataacgtttc |
2758317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 47955428 - 47955474
Alignment:
| Q |
153 |
tcttcttcttctaaattaacaaatttatcttgattttacatcttgca |
199 |
Q |
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| T |
47955428 |
tcttcttcttctaaattaacaaatttctcttgattttacatcttgca |
47955474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 40642154 - 40642249
Alignment:
| Q |
166 |
aattaacaaatttatcttgattttacatcttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatt |
261 |
Q |
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| T |
40642154 |
aattaacaaatttctcttgcttttacatttaggggcattgatttcagcaatatatgcttctaatgagttcaaatttgcaatcgatttgtttctatt |
40642249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 32019054 - 32019116
Alignment:
| Q |
28 |
ctggggtggttaactcgttgctaat-aaaacactacaagaatgttagtaagagattaataacgtttc |
93 |
Q |
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| T |
32019054 |
ctggggtggttaactcactgctaattaaaacactacaagaatgtt----agagattaataacgtttc |
32019116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 32019264 - 32019296
Alignment:
| Q |
166 |
aattaacaaatttatcttgattttacatcttgc |
198 |
Q |
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| T |
32019264 |
aattaacaagtttatcttgattttacatcttgc |
32019296 |
T |
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