View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089R-Insertion-9 (Length: 160)
Name: NF2089R-Insertion-9
Description: NF2089R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089R-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 1e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 9819606 - 9819757
Alignment:
| Q |
9 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
108 |
Q |
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| T |
9819606 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
9819705 |
T |
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| Q |
109 |
tccaaaattacattatagaaacctcgaaagttgaagcgattgtgttctgatt |
160 |
Q |
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| T |
9819706 |
tccaaaattacattatagaaaccacaaaagtttaagcgattgtgttctgatt |
9819757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 9854374 - 9854223
Alignment:
| Q |
9 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
108 |
Q |
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| T |
9854374 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
9854275 |
T |
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| Q |
109 |
tccaaaattacattatagaaacctcgaaagttgaagcgattgtgttctgatt |
160 |
Q |
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| T |
9854274 |
tccaaaattacattatagaaaccacaaaagtttaagcgattgtgttctgatt |
9854223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 8e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 44870459 - 44870602
Alignment:
| Q |
15 |
tcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaa |
114 |
Q |
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| T |
44870459 |
tcgatgttgctccttggtagccacaaaaactatctctgcaaccttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaa |
44870558 |
T |
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| Q |
115 |
attacattatagaaacctcgaaagttgaagcgattgtgttctga |
158 |
Q |
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| T |
44870559 |
atcacagtatagaaaccacggaagttcaagcgtttatgttctga |
44870602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 47523973 - 47523852
Alignment:
| Q |
9 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
108 |
Q |
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||||| |||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||| |||||| || ||||| |||| |||||||||| |
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| T |
47523973 |
ttgtcttcgatattgttccttggtagctacaaaaactatctctgcaaccttttgaccataaatccttatagttgcaaccgaaatgactttacccattttc |
47523874 |
T |
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| Q |
109 |
tccaaaattacattatagaaac |
130 |
Q |
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| T |
47523873 |
tctaaaatcacattatagaaac |
47523852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 47529345 - 47529208
Alignment:
| Q |
9 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
108 |
Q |
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||||| ||||| || || ||||||||||| |||||||| ||| |||||||| |||||||||||||||| ||| ||||| ||||||||||| |||||||| |
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| T |
47529345 |
ttgtcctcgatgttctttcttggtggccaagaaaactatctcagcaaccttgtgaccataaatccttatagtagccaccgaaatcacttcctccattttc |
47529246 |
T |
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| Q |
109 |
tccaaaattacattatagaaacctcgaaagttgaagcg |
146 |
Q |
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| T |
47529245 |
tccaaaatcacattatagaaaccacaaaagttcaagcg |
47529208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 47551022 - 47550891
Alignment:
| Q |
9 |
ttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccactgaaatcacttcacccattttc |
108 |
Q |
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||||| |||||||| || |||||||||| |||||| | ||| |||||||||||||||||||||||||| |||||||| || |||||| |||| |||| |
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| T |
47551022 |
ttgtcttcgatatttttttttggtggccatgaaaacaatctcagcaaccttttgaccataaatccttacggttgccacataactcactttaccccctttc |
47550923 |
T |
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| Q |
109 |
tccaaaattacattatagaaacctcgaaagtt |
140 |
Q |
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| T |
47550922 |
tctataatcacagtatagaaaccacgaaagtt |
47550891 |
T |
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