View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2089_high_13 (Length: 232)
Name: NF2089_high_13
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 5111353 - 5111571
Alignment:
| Q |
13 |
aacactacctacaaattgtaaccaagttgcgtccacattttgatcttatcttactttcaccaatcacttgcaaccttttcattaaatcctaactaaccat |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5111353 |
aacactacctaaaaattgtaaccaagttgcgtccacattttgatcttatcttactttcaccaatcacttgcaaccttttcattaaatcttaactaaccat |
5111452 |
T |
|
| Q |
113 |
ataccaagactacttcaaatgttcaaagggtaaaaaatagtgtagatctttttggcttgcattctcccaatttgtgtccatttgttcataagtgatagtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111453 |
ataccaagactacttcaaatgttcaaagggtaaaaaatagtgtagatctttttggcttgcattctcccaatttgtgtccatttgttcataagtgatagtg |
5111552 |
T |
|
| Q |
213 |
caagccaaacacactgtgg |
231 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5111553 |
caagccaaacacactgtgg |
5111571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University