View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2089_high_3 (Length: 433)

Name: NF2089_high_3
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2089_high_3
NF2089_high_3
[»] chr7 (6 HSPs)
chr7 (1-430)||(38095165-38095594)
chr7 (241-402)||(26788944-26789105)
chr7 (336-424)||(2507407-2507495)
chr7 (110-149)||(26788803-26788842)
chr7 (342-387)||(10350669-10350714)
chr7 (336-380)||(149574-149618)
[»] chr2 (5 HSPs)
chr2 (42-419)||(26179316-26179695)
chr2 (6-141)||(2757878-2758013)
chr2 (296-424)||(2757739-2757867)
chr2 (346-424)||(2758461-2758539)
chr2 (321-387)||(38356880-38356946)
[»] chr3 (6 HSPs)
chr3 (9-217)||(47955629-47955836)
chr3 (260-430)||(47956012-47956182)
chr3 (285-385)||(35898871-35898970)
chr3 (285-385)||(18753730-18753830)
chr3 (346-430)||(47955220-47955304)
chr3 (331-385)||(35899643-35899697)
[»] chr8 (7 HSPs)
chr8 (27-183)||(32019445-32019600)
chr8 (279-350)||(32019827-32019898)
chr8 (336-424)||(25988956-25989044)
chr8 (336-424)||(25989848-25989936)
chr8 (345-405)||(30794-30854)
chr8 (345-429)||(37767502-37767586)
chr8 (349-424)||(32018194-32018269)
[»] chr1 (5 HSPs)
chr1 (286-424)||(38002940-38003078)
chr1 (286-424)||(38003527-38003665)
chr1 (344-387)||(50900555-50900598)
chr1 (345-387)||(19986894-19986936)
chr1 (367-407)||(20291158-20291198)
[»] chr4 (1 HSPs)
chr4 (316-415)||(11960095-11960194)
[»] chr5 (2 HSPs)
chr5 (316-386)||(39985385-39985456)
chr5 (339-407)||(34597638-34597706)
[»] chr6 (1 HSPs)
chr6 (344-424)||(9880574-9880654)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 38095165 - 38095594
Alignment:
Q  1 ccatccacttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaattgcttccttcatcctaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38095165 ccatccacttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaat 38095264  T
Q  101 tgaatatttatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaatccatttttcaccagatagaatatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095265 tgaatatttatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaatccatttttcaccagatagaatatgt 38095364  T
Q  201 tcattgtttttgcttttacgtannnnnnnnatttcctttgatccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaac 300  Q
    |||||||| |||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095365 tcattgttattgcttttacgtattttttttatttcctttgatcctttcattaatccatttagtttgttagacaaggaagcttagttaacagagaactaac 38095464  T
Q  301 ggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaa 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  38095465 ggtgttacatgataggggtggtgtttgtagatatgaataaaaattaagggaggtttgcgtttagtttaaaactagagggggtgtttgtattatttaagaa 38095564  T
Q  401 aacctcaaggaaggtgagtataatctaccc 430  Q
    |||||||||||| |||||| |||| |||||    
T  38095565 aacctcaaggaatgtgagtgtaatttaccc 38095594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 241 - 402
Target Start/End: Original strand, 26788944 - 26789105
Alignment:
Q  241 atccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataa 340  Q
    ||||||||||||||||||| |||||||| ||||| ||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26788944 atccttccattaatccattgagtttgttcgacaatgaagctgtgttaacacagaactaacagtgttacatgataggggtggtgtttgtagatttgaataa 26789043  T
Q  341 aaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaa 402  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||   ||||||||||||    
T  26789044 aaattaagggaggtttgtgtttagttaaaaactagagggggtgtttgtgctatttaagaaaa 26789105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 2507495 - 2507407
Alignment:
Q  336 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||| || || || |||||||||||||||| | |||||||| ||||    
T  2507495 aataaaacttaagggagattagtgtttagtttaaaattagatggggtattggcgttttttaagaaaacctcaaaggaggtgagtgtaat 2507407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 26788803 - 26788842
Alignment:
Q  110 atcacgtttaggcatcaaacttcacgcctcaaaagctaag 149  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  26788803 atcacgtttagggatcaaacttcacgcctcaaaagctaag 26788842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 10350714 - 10350669
Alignment:
Q  342 aattaagggaggtttgtgtttagtttaaaattagagggggtgtttg 387  Q
    |||||||||||||  ||||| ||||||||| |||||||||||||||    
T  10350714 aattaagggaggtgggtgttaagtttaaaactagagggggtgtttg 10350669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 149574 - 149618
Alignment:
Q  336 aataaaaattaagggaggtttgtgtttagtttaaaattagagggg 380  Q
    ||||||| | ||||||||||||||||||||| |||| ||||||||    
T  149574 aataaaattcaagggaggtttgtgtttagttgaaaactagagggg 149618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 42 - 419
Target Start/End: Original strand, 26179316 - 26179695
Alignment:
Q  42 caattcatccaactttattatgttgatgtgaattacaattgcttccttcatcctaaaattgaatatttatcacgtttaggcatcaaacttcacgcctcaa 141  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26179316 caattcatccaactttattatgttgatgtgaattacaatcgcttccttcatcctaaaattgaatatctatcacgtttaggcatcaaacttcacgcctcaa 26179415  T
Q  142 aagctaaggttttatttcaggtctttccattaatccatttttcaccagatagaatatgttcattgtttttgcttttacgta--nnnnnnnnatttccttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          ||||| |||    
T  26179416 aagctaaggttttatttcaggtctttccattaatccatttttcaccagatagaatatgttcattgttattgcttttacgtattttttttttatttcattt 26179515  T
Q  240 gatccttccattaatccatttagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaata 339  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26179516 gatccttccattaatacatttagcttgttagacaaggaagcttagttaacagagaactaacagtgttacatgataggggtggtgtttgtagatttgaata 26179615  T
Q  340 aaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagt 419  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||    
T  26179616 aaaataaagggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagt 26179695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 2758013 - 2757878
Alignment:
Q  6 cacttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaattgcttccttcatcctaaaattgaat 105  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||| || |||||||    
T  2758013 cacttccttctccaattctacaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattaaaatcacttgcttcatccaaatattgaat 2757914  T
Q  106 atttatcacgtttaggcatcaaacttcacgcctcaa 141  Q
    |||||| | |||||| ||||||||||||||| ||||    
T  2757913 atttattatgtttagacatcaaacttcacgcttcaa 2757878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 424
Target Start/End: Complemental strand, 2757867 - 2757739
Alignment:
Q  296 ctaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattattt 395  Q
    ||||||||||||||||||||||| |||| ||||| |||| |||||||||||| ||| ||  ||||||| || ||||||||||||| |||| |  ||||||    
T  2757867 ctaacggtgttacatgataggggaggtgcttgtaaatttaaataaaaattaatggatgtaagtgtttaattaaaaattagaggggatgttagtgttattt 2757768  T
Q  396 aagaaaacctcaaggaaggtgagtataat 424  Q
    ||||| ||||||||| |||||||| ||||    
T  2757767 aagaagacctcaagggaggtgagtgtaat 2757739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 2758461 - 2758539
Alignment:
Q  346 aagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    |||||||||| |||||||||||||||||||||||| |||| |  ||||||||||| |||| |||| |||||||| ||||    
T  2758461 aagggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaat 2758539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 38356946 - 38356880
Alignment:
Q  321 gtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttg 387  Q
    ||||||||| |||||| ||||| ||||||||||||  ||| |  ||||||| |||||||||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttg 38356880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 47955629 - 47955836
Alignment:
Q  9 ttccttctctaattgtccaaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaattgcttccttcatcctaaaattgaatatt 108  Q
    ||||||||| |||| | ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  47955629 ttccttctccaattctgcaaaagccacgttaagcaattcatccaattttattatgttgatgtgaattacaatcacttccttcatcctaaaattgaatatt 47955728  T
Q  109 tatcacgtttaggcatcaaacttcacgcctcaaaagctaaggttttatttcaggtctttccattaatccatttttcaccagatagaatatgttcattgtt 208  Q
    | | | ||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||| ||  ||||||||    
T  47955729 ttttatgttga-gcatcaaacttcacgcctcaaaagctgaggttttatttcagttctttccattaatccatttttcactaggtagaagataatcattgtt 47955827  T
Q  209 tttgctttt 217  Q
     || |||||    
T  47955828 attcctttt 47955836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 260 - 430
Target Start/End: Original strand, 47956012 - 47956182
Alignment:
Q  260 tagtttgttagacaaggaagcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtg 359  Q
    |||||| || |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||    
T  47956012 tagttttttcgacaaggaagctaagttaacagagaaccaacggtgttacatgacaggggtggtgtttgtagatttgattaaaaattaagggagattagtg 47956111  T
Q  360 tttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctaccc 430  Q
    |||||||| ||| ||||||||||||| |   |||||||||| ||||||||  |||||||| |||| |||||    
T  47956112 tttagttttaaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagtgtaatttaccc 47956182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 35898970 - 35898871
Alignment:
Q  285 ttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgt 384  Q
    |||||||||| ||||||||| ||  ||| | ||| |||| ||||  ||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||    
T  35898970 ttaacagaga-ctaacggtgctaagtgaaaagggaggtggttgtctatttgaataaaaaataagggaggttagtgttgagttaaaaaatagagggggtgt 35898872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 18753730 - 18753830
Alignment:
Q  285 ttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaat-taagggaggtttgtgtttagtttaaaattagagggggtg 383  Q
    |||||||||| ||||||||||||  ||| | ||| |||| ||||  |||||||||||||  ||||||||||| ||||| |||| |||| |||||||||||    
T  18753730 ttaacagaga-ctaacggtgttaagtgaaaagggaggtggttgtctatttgaataaaaaaataagggaggttagtgttgagttaaaaaatagagggggtg 18753828  T
Q  384 tt 385  Q
    ||    
T  18753829 tt 18753830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 47955304 - 47955220
Alignment:
Q  346 aagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctaccc 430  Q
    ||||||||||  |||||| || |||| ||||||||||||| |   ||||||||||||| |||||| |||||||| |||| |||||    
T  47955304 aagggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttaccc 47955220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 35899643 - 35899697
Alignment:
Q  331 atttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 385  Q
    ||||| |||| |||||||||||||| ||||| |||| |||| |||||||||||||    
T  35899643 atttgtataacaattaagggaggttagtgttgagttaaaaactagagggggtgtt 35899697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 32019445 - 32019600
Alignment:
Q  27 aaaagcaacattaagcaattcatccaactttattatgttgatgtgaattacaattgcttccttcatcctaaaattgaatatttatcacgtttaggcatca 126  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||||||| ||||||| |||||||| |||| ||| |||||    
T  32019445 aaaagcaacattaagcaattcatccaactttattatgtcgatgtgaattaaaatcacttccttcatccaaaaattg-atatttattacgtatagacatca 32019543  T
Q  127 aacttcacgcctcaaaagctaaggttttatttcaggtctttccattaatccattttt 183  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  32019544 aacttctcgcctcaaaagctaaggttttatctcaggtctttccattaagcctttttt 32019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 32019827 - 32019898
Alignment:
Q  279 gcttagttaacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaaggg 350  Q
    ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||| ||||||||    
T  32019827 gcttagttaacagagaactaacggtgttatataataggggaggcgtttgtagatttgaataaacattaaggg 32019898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 25989044 - 25988956
Alignment:
Q  336 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    ||||||| ||||||||||||||||||||||  |||| ||||||||||||| |  || ||||||||||||||| || |||| ||| ||||    
T  25989044 aataaaatttaagggaggtttgtgtttagtagaaaactagagggggtgttagggttgtttaagaaaacctcatggtaggtaagtgtaat 25988956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 25989848 - 25989936
Alignment:
Q  336 aataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    ||||||| ||||||||||||||||||||||| |||| || |||||||||| |  || |||||||||| |  |||| |||||||| ||||    
T  25989848 aataaaatttaagggaggtttgtgtttagttgaaaactaaagggggtgttagtgttttttaagaaaatcataagggaggtgagtgtaat 25989936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 30794 - 30854
Alignment:
Q  345 taagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacct 405  Q
    ||||||||||| ||||||||||||||| || ||||||| |||   ||||||||||||||||    
T  30794 taagggaggttagtgtttagtttaaaactaaagggggtctttttgttatttaagaaaacct 30854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 37767502 - 37767586
Alignment:
Q  345 taagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataatctacc 429  Q
    |||||||||||| ||||||||| |||| |||||||| ||||||  |||||||| || |||||| || |||| ||| |||| ||||    
T  37767502 taagggaggtttatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaatttacc 37767586  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 32018269 - 32018194
Alignment:
Q  349 ggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    ||||||| |||||||||| ||||||||||||  |||| |  ||||||||||| ||||||| ||| |||||| ||||    
T  32018269 ggaggttagtgtttagttaaaaattagagggaatgttagtgttatttaagaagacctcaaagaaagtgagtgtaat 32018194  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 424
Target Start/End: Complemental strand, 38003078 - 38002940
Alignment:
Q  286 taacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 385  Q
    |||||||| ||||||  |||||||| | |  || ||||||||| | |||||||||||||||||||||||  ||||||| || |||| |||||||| ||||    
T  38003078 taacagagcactaacaatgttacataacaatggaggtgtttgtcgctttgaataaaaattaagggaggtaagtgtttaattaaaaactagaggggatgtt 38002979  T
Q  386 tgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
     |   ||||||||||||||| |||| |||||||| ||||    
T  38002978 agtgctatttaagaaaacctaaagggaggtgagtgtaat 38002940  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 424
Target Start/End: Original strand, 38003527 - 38003665
Alignment:
Q  286 taacagagaactaacggtgttacatgataggggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtt 385  Q
    |||||||| ||| ||| |||||||||||||||| |||| ||||   ||||||||||| |||  ||| ||| |||||||||| |||| |||||||| ||||    
T  38003527 taacagagcactcacgctgttacatgataggggaggtgattgtcactttgaataaaagttataggaagttagtgtttagttaaaaagtagaggggttgtt 38003626  T
Q  386 tgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
     |   |||||||||| |||| |||| |||||||| ||||    
T  38003627 agtgctatttaagaagaccttaagggaggtgagtgtaat 38003665  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 50900555 - 50900598
Alignment:
Q  344 ttaagggaggtttgtgtttagtttaaaattagagggggtgtttg 387  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
T  50900555 ttaagggaggttagtatttattttaaaattagagggggtgtttg 50900598  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 19986894 - 19986936
Alignment:
Q  345 taagggaggtttgtgtttagtttaaaattagagggggtgtttg 387  Q
    |||||||||||||| |||||||||||| |||||| ||||||||    
T  19986894 taagggaggtttgtatttagtttaaaactagaggaggtgtttg 19986936  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 20291198 - 20291158
Alignment:
Q  367 taaaattagagggggtgtttgcattatttaagaaaacctca 407  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  20291198 taaaactagagggggtgtttgtgttatttaagaaaacctca 20291158  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 11960194 - 11960095
Alignment:
Q  316 gggtggtgtttgtagatttgaataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggt 415  Q
    ||||||||||| |  ||||||  | ||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||  ||||||||||| ||||    
T  11960194 gggtggtgtttttcaatttgataacaaaataagggaggtttgtgtttagtttaaaactagagggggtgtttgtgctatttaactaaacctcaagggaggt 11960095  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 39985385 - 39985456
Alignment:
Q  316 gggtggtgtttgtagatttga-ataaaaattaagggaggtttgtgtttagtttaaaattagagggggtgttt 386  Q
    |||||||||||||  |||||| | ||||| ||||||||||||||||||||||||||| || |||||||||||    
T  39985385 gggtggtgtttgtcaatttgataaaaaaaataagggaggtttgtgtttagtttaaaactaaagggggtgttt 39985456  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 407
Target Start/End: Original strand, 34597638 - 34597706
Alignment:
Q  339 aaaaattaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctca 407  Q
    |||| ||| |||||| | ||||||| |||||||||||||||| ||||||  ||||||||| | ||||||    
T  34597638 aaaacttaggggaggctagtgtttattttaaaattagaggggatgtttgtgttatttaaggagacctca 34597706  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 9880654 - 9880574
Alignment:
Q  344 ttaagggaggtttgtgtttagtttaaaattagagggggtgtttgcattatttaagaaaacctcaaggaaggtgagtataat 424  Q
    |||||||||||| |||| || ||||||| |||||||||||| |   ||||||||  ||| ||||||| |||||||| ||||    
T  9880654 ttaagggaggttggtgtctattttaaaactagagggggtgtctttgttatttaaagaaaactcaagggaggtgagtgtaat 9880574  T

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