View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089_high_7 (Length: 270)
Name: NF2089_high_7
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19026761 - 19026509
Alignment:
| Q |
1 |
tttgtgaaaatgattgattttgcagacttcagagagaaaattggacgcgccagatattttggacgatttctgtttgaatttattagattggggttgcagc |
100 |
Q |
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| T |
19026761 |
tttgtggaaatgattgattttgcagacttcggagagaaaattgcatgcgccagatattttggacgatttctgtttgaatttattagattggggttgcagc |
19026662 |
T |
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| Q |
101 |
aatgtacttagtattgcccttgaaaatgatgtttatctttggaatgcttcaaataaatccactgcagaacttgttagtgtggatgaggaagatggtcccg |
200 |
Q |
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| T |
19026661 |
aatgtccttagtattgcccttgaaaatgatgtttatctttggaatgcttcaaataaatccactgcagaacttgttagtgtggatgaggaagatggtcccg |
19026562 |
T |
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| Q |
201 |
tcacaagtgttagctggtgtcctgatggaagtagattagccattggtttggat |
253 |
Q |
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| T |
19026561 |
tcacaagtgttagctggtgtcctgatggaagtagattagccattggtttggat |
19026509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20727875 - 20728127
Alignment:
| Q |
1 |
tttgtgaaaatgattgattttgcagacttcagagagaaaattggacgcgccagatattttggacgatttctgtttgaatttattagattggggttgcagc |
100 |
Q |
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| T |
20727875 |
tttgtggaaatgattgattttgcagacttcggagagaaaattgcatgcgccagatattttggacgatttctgtttgaatttattagattggggttgcagc |
20727974 |
T |
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| Q |
101 |
aatgtacttagtattgcccttgaaaatgatgtttatctttggaatgcttcaaataaatccactgcagaacttgttagtgtggatgaggaagatggtcccg |
200 |
Q |
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| T |
20727975 |
aatgtccttagtattgcccttgaaaatgatgtttatctttggaatgcttcaaataaatccactgcagaacttgttagtgtggatgaggaagatggtcccg |
20728074 |
T |
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| Q |
201 |
tcacaagtgttagctggtgtcctgatggaagtagattagccattggtttggat |
253 |
Q |
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| T |
20728075 |
tcacaagtgttagctggtgtcctgatggaagtagattagccattggtttggat |
20728127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43527578 - 43527363
Alignment:
| Q |
1 |
tttgtgaaaatgattgattttgcagacttcagagagaaaattggacgcgccagatattttggacgatttctgtttgaatttattagattggggttgcagc |
100 |
Q |
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||||||||||||||| ||||||||||||| ||||| | |||||||| || ||||| || || || || | |||||||| |||| |||||| ||||| |
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| T |
43527578 |
tttgtgaaaatgattt-ttttgcagacttctgagaggaccttggacgcacctgatatcttagatgacttttacttgaatttgctagactggggtagcagc |
43527480 |
T |
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| Q |
101 |
aatgtacttagtattgcccttgaaaatgatgtttatctttggaatgcttcaaataaatccactgcagaacttgttagtgtggatgaggaagatggtcccg |
200 |
Q |
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||||| | |||||||||||||||||| ||||||||||||||||||||| || |||||| |||| ||||| | ||| ||||| || |||||||| | |
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| T |
43527479 |
aatgttgtcagtattgcccttgaaaataccgtttatctttggaatgcttcagattcctccacttcagagcttgtcactgtagatgatgatgatggtcctg |
43527380 |
T |
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| Q |
201 |
tcacaagtgttagctgg |
217 |
Q |
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| T |
43527379 |
tcacaagcgttagctgg |
43527363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 16662379 - 16662431
Alignment:
| Q |
53 |
gatattttggacgatttctgtttgaatttattagattggggttgcagcaatgt |
105 |
Q |
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| T |
16662379 |
gatatcttggacgatttcaacttgaatttattagactggggttgcagtaatgt |
16662431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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