View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089_low_10 (Length: 250)
Name: NF2089_low_10
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15394327 - 15394090
Alignment:
| Q |
13 |
cagaaaacttctgaaacaaatcaaaataacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaat |
112 |
Q |
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| T |
15394327 |
cagaaaacttctgaaacaaatcaaattaacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaaagttgcaaat |
15394228 |
T |
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| Q |
113 |
tgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15394227 |
tgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcaaa |
15394128 |
T |
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| Q |
213 |
tttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15394127 |
tttctgttgcaaatcccacatactacctttgttatcat |
15394090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15385893 - 15385655
Alignment:
| Q |
13 |
cagaaaacttctgaaacaaatcaaaataacatagatcgaaaaa-ttacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
15385893 |
cagaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattacttaaaatcacttaacagacatgtcgtagacatcaaaatttcaaagttgcaaa |
15385794 |
T |
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| Q |
112 |
ttgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcga |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
15385793 |
ttgcagtttcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttctgagccttcctgcttctgcatccattggctggtcaa |
15385694 |
T |
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| Q |
212 |
atttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15385693 |
gtttctgttccaaatcccacatactgcctttgttatcat |
15385655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 38669678 - 38669778
Alignment:
| Q |
149 |
atcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttgttatc |
248 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||| | ||||| | ||||||||||||||||||||||||||| |
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| T |
38669678 |
atcatactttttctctgtacatattcctgagtcttcctgcctcttcctccataggctggtcaagcttctgatccaaatcccacatactacctttgttatc |
38669777 |
T |
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| Q |
249 |
a |
249 |
Q |
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| T |
38669778 |
a |
38669778 |
T |
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