View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089_low_2 (Length: 437)
Name: NF2089_low_2
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 15393959 - 15393534
Alignment:
| Q |
1 |
aacattggaaacagaacaaaaacttatgtagttaccaaaaaactgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaa |
100 |
Q |
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| T |
15393959 |
aacattggaaacagaacaaaaacttatgtagttaccaaaaaactgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaa |
15393860 |
T |
|
| Q |
101 |
cttcatatttgagtgaacttcattttgcaagctgaactcaattttattgtatttttaaaattggggtagagtgtagtgannnnnnnnnnnnnnnnnaagt |
200 |
Q |
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| T |
15393859 |
cttcatatttgagtgaacttcattttgcaagctgaactcaattttattgtatttttaaaattggggaagagtgtagtgatattattattattattaaagt |
15393760 |
T |
|
| Q |
201 |
gacatcaacgatcattttacatcatttctcgagtgatattattatttattgaaaatcaaacaaagattttctatctatctaactttttgaactgatgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15393759 |
gacatcaacgatcattttacatcatttctcgagtgatattatgatttattgaaaatcaaacaaagattttctttctatctaactttttgaactgatgttt |
15393660 |
T |
|
| Q |
301 |
gagggctcctaacagaaaacaaaacattc-------tgaagcaaaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaa |
393 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15393659 |
gagggctcctaacagaaaacaaaacatgctctttaatgaagcaaaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaa |
15393560 |
T |
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| Q |
394 |
caaattatttaacaaatgtccgttct |
419 |
Q |
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| T |
15393559 |
caaattatttaacaaatgtccgttct |
15393534 |
T |
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