View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2089_low_4 (Length: 375)
Name: NF2089_low_4
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 45200778 - 45200418
Alignment:
| Q |
1 |
acgatgagtcattgtgattttggtaaaagccatacatagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacattttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
45200778 |
acgatgagtcattgtgattttggtaaaagccatacttagcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacattttatt |
45200679 |
T |
|
| Q |
101 |
ttttacaatctatgaataacagacattgacatgtcgacaacaataatcaattgtcggtgtggtgttgatgtccgacactaagatgtgttggacaccatac |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45200678 |
tgttacaatctatgaataacagacattgacatgtcgacaacaataatcatttgtcggtgtggtgttgatgtccgacactgagatgtgttggacaccatac |
45200579 |
T |
|
| Q |
201 |
atgcatttgatcagaagtgtcgatgctacaaatgttataagttatatattcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagag |
300 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45200578 |
atacattcgatcagaagtgtcgatgctacaaatgttataagtt--atattcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagag |
45200481 |
T |
|
| Q |
301 |
aatccctgttgatgaagtgtttcgagaattgaattgtactaaagaaggtctcactaatgatga |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45200480 |
aatccctgttgatgaagtgtttcgagaattgaattgtactaaagaaggtctcactaatgatga |
45200418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 7873108 - 7873062
Alignment:
| Q |
36 |
atagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
82 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
7873108 |
atagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac |
7873062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 23585733 - 23585692
Alignment:
| Q |
40 |
cttcaacaaaatcatgatgtcaccgtgattttgacaaactca |
81 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
23585733 |
cttcaacaaaatcatgttgtcactgtgattttgtcaaactca |
23585692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 27870946 - 27870987
Alignment:
| Q |
41 |
ttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
82 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
27870946 |
ttcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University