View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089_low_6 (Length: 284)
Name: NF2089_low_6
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 38095092 - 38094824
Alignment:
| Q |
1 |
caggaatcaaagaaatagaaacaaatcgattgaaaatctgaacccattagctacatatattgttgaaaccaatgatgcaagatgtaaaatcaagataaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
38095092 |
caggaatcaaagaaatagaaacaaatcgattgaaaatctgaacccattagctacatatattgttgaaaccaatgatgcaagatgtaaaat-aagagaaat |
38094994 |
T |
|
| Q |
101 |
ttgttaatttagaagaagaaga---tgatgatgtgaattgaatgtaggtgtgaaatccatgtgaattgatgtcaattgaaatttgaaacgttattaatct |
197 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38094993 |
ttgttaatttagaagaagaagaagatgatgatgtgaattgaatgtaggtgtgaaatccatgtgaattgatgtcaattgaaatttgaaacgttattaatct |
38094894 |
T |
|
| Q |
198 |
cttactaacattcttgtagtgtttt-attagcaacgagttaaccaccccagtagtggtagccaaattatg |
266 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38094893 |
cttactaacattcttgtagtgttttaattagcaacgagttaaccaccccagtagtggtagccaaattatg |
38094824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 26179322 - 26179214
Alignment:
| Q |
159 |
tgaattgatgtcaattgaaatttgaaacgttattaatctcttactaacattcttgtagtgtttt-attagcaacgagttaaccaccccagtagtggtagc |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26179322 |
tgaattgatgtcaattgaaatttgaaacgttattaatctcttactaacattcttgtagtgttttaattagcaacgagttaaccaccccagtagtggtagc |
26179223 |
T |
|
| Q |
258 |
caaattatg |
266 |
Q |
| |
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||||||||| |
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| T |
26179222 |
caaattatg |
26179214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 2758091 - 2758176
Alignment:
| Q |
23 |
aaatcgattgaaaatctgaacccattagctacatatattgttgaaaccaatgatgcaagatgtaaaatcaagataaatttgttaatt |
109 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||||||||| ||||| ||| | |||||||||||||| ||||||||||||| |
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| T |
2758091 |
aaatcgattgaaaatatgaactcattagcagcatatattgttgaaatcaatgctgc-atatgtaaaatcaagagaaatttgttaatt |
2758176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 2758317 - 2758399
Alignment:
| Q |
182 |
gaaacgttattaatctcttactaacattcttgtagtgtttt-attagcaacgagttaaccacccca-gtagtggtagccaaatt |
263 |
Q |
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| T |
2758317 |
gaaacgttatcaatctctaa-taacattcttgtagtgttttaattatcagtgagttaaccaccccaggtagtggtagcaaaatt |
2758399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 47955547 - 47955428
Alignment:
| Q |
5 |
aatcaaagaaatagaaacaaatcgattgaaaatctgaacc-----cattagctacatatattgttgaaaccaatgatgcaagatgtaaaatcaagataaa |
99 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||||| || || |||||||||||||||||| ||| |
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| T |
47955547 |
aatcaaagaaatctaaacaaaccgattgaaaatctgaactgaactcattagtagaatatattgttgaaatcattg---caagatgtaaaatcaagagaaa |
47955451 |
T |
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| Q |
100 |
tttgttaatttagaagaagaaga |
122 |
Q |
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| T |
47955450 |
tttgttaatttagaagaagaaga |
47955428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 40642253 - 40642154
Alignment:
| Q |
10 |
aagaaatagaaacaaatcgattgaaaatctgaacccattagctacatatattgttgaaaccaatgatgcaagatgtaaaatcaagataaatttgttaatt |
109 |
Q |
| |
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||||||||||||||||||||||| |||| ||||| |||||| ||||||||| ||||| ||||| | | |||||||| ||||| ||||||||||||| |
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| T |
40642253 |
aagaaatagaaacaaatcgattgcaaatttgaactcattagaagcatatattgctgaaatcaatgcccctaaatgtaaaagcaagagaaatttgttaatt |
40642154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 32019116 - 32019054
Alignment:
| Q |
182 |
gaaacgttattaatctcttactaacattcttgtagtgtttt-attagcaacgagttaaccaccccag |
247 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
32019116 |
gaaacgttattaatctct----aacattcttgtagtgttttaattagcagtgagttaaccaccccag |
32019054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 32019344 - 32019298
Alignment:
| Q |
5 |
aatcaaagaaatagaaacaaatcgattgaaaatctgaacccattagc |
51 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
32019344 |
aatcaaagaaatagaaacaaatgaattgaaaatatgaactcattagc |
32019298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 32019296 - 32019264
Alignment:
| Q |
77 |
gcaagatgtaaaatcaagataaatttgttaatt |
109 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
32019296 |
gcaagatgtaaaatcaagataaacttgttaatt |
32019264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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