View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2089_low_8 (Length: 254)
Name: NF2089_low_8
Description: NF2089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2089_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8696071 - 8696307
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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| T |
8696071 |
tcattgatgattgtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
8696170 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696171 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttggccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
8696270 |
T |
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| Q |
201 |
gaataaggcaacatgtgctaagtgttgaggtccattt |
237 |
Q |
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| T |
8696271 |
gaataaggcaacatgtgctaagtgttgaggtccattt |
8696307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8674964 - 8674728
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8674964 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgaa |
8674865 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
200 |
Q |
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| T |
8674864 |
cggttaggtacatcctcttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
8674765 |
T |
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| Q |
201 |
gaataaggcaacatgtgctaagtgttgaggtccattt |
237 |
Q |
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| T |
8674764 |
ggataaggcaacttgagctaagtgttgaggtccattt |
8674728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8687502 - 8687738
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8687502 |
tcattgatgattgtgttaaatttattcaacctttttagttctttgatggcttgactaagttgatcaacactatcattaatttgattcacacaatcttgca |
8687601 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
200 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | |
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| T |
8687602 |
cggttaggtacatcctcttgttgttgtgatcaatagctttgagttcctttgccgcattcaaaaggtatcctcttgtttgcaatgctctcgagaggctcac |
8687701 |
T |
|
| Q |
201 |
gaataaggcaacatgtgctaagtgttgaggtccattt |
237 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||| |
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| T |
8687702 |
ggataaggcaacatttgctaagtgttgaggtccattt |
8687738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8693195 - 8692959
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8693195 |
tcattgatgattgtgttaaatttattcaacctttttagttctttgatggcttggctaagttgatcaacactatcattgatttgattcacacaatcttgca |
8693096 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
8693095 |
cggttaggtacatccttttgttgttgtgatcaatagctttgagttccttggccacattcaaaaggtaccctcttgtttgcaatgctctagagaagctcac |
8692996 |
T |
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| Q |
201 |
gaataaggcaacatgtgctaagtgttgaggtccattt |
237 |
Q |
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| T |
8692995 |
ggataaggcaacatgtgctaagtgttgaggtccattt |
8692959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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