View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20900_high_4 (Length: 385)
Name: NF20900_high_4
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 46736861 - 46736524
Alignment:
| Q |
30 |
ttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
129 |
Q |
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| T |
46736861 |
ttcaatatctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
46736762 |
T |
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| Q |
130 |
tagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataataatactcattaaaaattgagtatgactattatgggccacgagca |
229 |
Q |
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| T |
46736761 |
tagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataattatactcattaaaaattgagtatgattattatgggccacgagca |
46736662 |
T |
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| Q |
230 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcattt |
329 |
Q |
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| T |
46736661 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccacatctttcattt |
46736562 |
T |
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| Q |
330 |
ccggacgcttttctggattcttgtcccagcatcttttc |
367 |
Q |
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| T |
46736561 |
ccggacgcttttctggattcttgtcccagcatcttttc |
46736524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 986262 - 986195
Alignment:
| Q |
269 |
atcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacg |
336 |
Q |
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| T |
986262 |
atcattccaccacctttgcttgtatccagtgcttctagcattatcaccacatccttcatttccggacg |
986195 |
T |
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