View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20900_high_6 (Length: 318)
Name: NF20900_high_6
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_high_6 |
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| [»] scaffold0166 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 19900 - 19623
Alignment:
| Q |
41 |
acctagcatgagcgcagcccctaagatttcaaaatttattctcaaattgctttgttccaattgattcattactccactcacatattcatcacatgttctt |
140 |
Q |
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| T |
19900 |
acctagcatgagcgcagcccctaagatttcaaaatttattctcaaattgctttgttccaattgattcattactctactcacatattcatcacatgttctt |
19801 |
T |
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| Q |
141 |
tcaatttcattgtgagtgctagagccattacttgtttcaatttcaacgaaacaacatcttggtgaattgttacgtgaattgaagagtggtttaatttctg |
240 |
Q |
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| T |
19800 |
tcaatttcattgtgagtgctagagccattacttgtttcaatttcaacgaaacaacatcttggtgaattgttacgtgaattgaagagtggtttaatttctg |
19701 |
T |
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| Q |
241 |
cgatctccttttcttcttccatcccaacagacttcacttctagttcatatttaacctagccacggccatgccgtttga |
318 |
Q |
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| T |
19700 |
cgatctccttttcttcttccatcccaacagacttcacttctagttcatatttaacctagccacggccatgccgtttga |
19623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 24777517 - 24777240
Alignment:
| Q |
41 |
acctagcatgagcgcagcccctaagatttcaaaatttattctcaaattgctttgttccaattgattcattactccactcacatattcatcacatgttctt |
140 |
Q |
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| T |
24777517 |
acctagcatgagcgcagcccctaagatttcaaaatttattctcaaattgctttgttccaattgattcattactctactcacatattcatcacatgttctt |
24777418 |
T |
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| Q |
141 |
tcaatttcattgtgagtgctagagccattacttgtttcaatttcaacgaaacaacatcttggtgaattgttacgtgaattgaagagtggtttaatttctg |
240 |
Q |
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| T |
24777417 |
tcaatttcattgtgagtgctagagccattacttgtttcaatttcaacgaaacaacatcttggtgaattgttacgtgaattgaagagtggtttaatttctg |
24777318 |
T |
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| Q |
241 |
cgatctccttttcttcttccatcccaacagacttcacttctagttcatatttaacctagccacggccatgccgtttga |
318 |
Q |
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| T |
24777317 |
cgatctccttttcttcttccatcccaacagacttcacttctagttcatatttaacctagccacggccatgccgtttga |
24777240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 10430785 - 10430867
Alignment:
| Q |
22 |
tcgctctgctagggtttgcacctagcatgagcgcagcccctaagatttcaaaatttattctcaaattgctttgttccaattgatt |
106 |
Q |
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| T |
10430785 |
tcgctcttctagggtttgcacctagcatgagcgcagccccta--attttcaaattcatcaccaaattgctttgtttcaattgatt |
10430867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 30730040 - 30730090
Alignment:
| Q |
112 |
ctccactcacatattcatcacatgttctttcaatttcattgtgagtgctag |
162 |
Q |
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| T |
30730040 |
ctccactcacatattcattacttgctcattcaaattcattgtgagtgctag |
30730090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 24315189 - 24315232
Alignment:
| Q |
17 |
atgattcgctctgctagggtttgcacctagcatgagcgcagccc |
60 |
Q |
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| T |
24315189 |
atgaatcgctctgctagagtttgcacctagcatgagcgctgccc |
24315232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16600868 - 16600825
Alignment:
| Q |
16 |
catgattcgctctgctagggtttgcacctagcatgagcgcagcc |
59 |
Q |
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| T |
16600868 |
catgaatcgctctgttagggtttgcacctagcaagagcgcagcc |
16600825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 7653134 - 7653168
Alignment:
| Q |
22 |
tcgctctgctagggtttgcacctagcatgagcgca |
56 |
Q |
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| T |
7653134 |
tcgctctgctagggtttgcacctagcaagagcgca |
7653168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 27541110 - 27541074
Alignment:
| Q |
24 |
gctctgctagggtttgcacctagcatgagcgcagccc |
60 |
Q |
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| T |
27541110 |
gctctactagggtttgcacctagcaagagcgcagccc |
27541074 |
T |
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