View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20900_high_8 (Length: 306)
Name: NF20900_high_8
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 6066825 - 6067093
Alignment:
| Q |
19 |
cacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaagga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6066825 |
cacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaagga |
6066924 |
T |
|
| Q |
119 |
atgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6066925 |
atgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaact |
6067024 |
T |
|
| Q |
219 |
tcgacaaatgataaaagatatgcagattcatagtcctttaatcccttcttttagtcctttggatgatac |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6067025 |
tcgacaaatgataaaagatatgcagattcatagtcctttaatcccttcttttagtcctttggatgatac |
6067093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 5744823 - 5745028
Alignment:
| Q |
23 |
gaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaaggaatga |
122 |
Q |
| |
|
|||| ||| |||| ||||| || ||||| || || || || |||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5744823 |
gaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaaaacagcttgatgagctttggtcacaagttgtttggctaaggaatga |
5744922 |
T |
|
| Q |
123 |
aaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaacttcga |
222 |
Q |
| |
|
|||||||||| | |||| || || ||| || | | ||||| ||||||| ||||||| |||||||||| ||| | |||||| |||||| |||||||||| |
|
|
| T |
5744923 |
aaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagttgtccaagagaatgttcaattgaaagaacaagcttcggaacttcga |
5745022 |
T |
|
| Q |
223 |
caaatg |
228 |
Q |
| |
|
|||||| |
|
|
| T |
5745023 |
caaatg |
5745028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University