View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20900_low_11 (Length: 245)
Name: NF20900_low_11
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9085920 - 9085698
Alignment:
| Q |
18 |
aaagagactttctttcacctcttttattttgtgacagacatttgcttggtcacaactacaaataatttcatttgggcgcacagacacgcaaattaaatgg |
117 |
Q |
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| T |
9085920 |
aaagagactttctttcacctcttttattttgtgacagacatttgcttggtcacaactacaaataatttcatttgggcgcacagacacgcaaat-----gg |
9085826 |
T |
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| Q |
118 |
ggaaaaggtaaaagaagaaacactttaatactatgttattttaaataattaaattgataagtactttcatgtgtgtgcacctaaatgtattttatttgtg |
217 |
Q |
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| T |
9085825 |
ggaaaaggtaaaagaagaaacactttaatactatgttattttaaataattaaattgataagtacttttatgtttgtgcacctaaatgtattttatttgtg |
9085726 |
T |
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| Q |
218 |
gttgttcccatataagtgtttctctgat |
245 |
Q |
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| T |
9085725 |
gttgttcccatataattgtttctctgat |
9085698 |
T |
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 23951176 - 23951062
Alignment:
| Q |
124 |
ggtaaaagaagaaacactttaatactatgttattttaaataattaaattgataagtactttcatgtgtgtgcacctaaatgtattttatttgtggttgtt |
223 |
Q |
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| T |
23951176 |
ggtaaaagaagaaatacttaaataatatgttattttaaatgattaaa-tgataaatacttttatatgtgt--atctaaatgtattttatttgtagttgtt |
23951080 |
T |
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| Q |
224 |
cccatataagtgtttctc |
241 |
Q |
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| T |
23951079 |
tctatataaatatttctc |
23951062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 37644801 - 37644851
Alignment:
| Q |
172 |
tgataagtactttcatgtgtgtgcacctaaatgtattttatttgtggttgt |
222 |
Q |
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| T |
37644801 |
tgataagtacttttatatgtgcgcgcataaatgtattttatttgtggttgt |
37644851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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