View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20900_low_14 (Length: 216)

Name: NF20900_low_14
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20900_low_14
NF20900_low_14
[»] chr1 (14 HSPs)
chr1 (1-163)||(49273951-49274113)
chr1 (1-163)||(49268244-49268405)
chr1 (1-163)||(49255520-49255681)
chr1 (5-155)||(49273272-49273421)
chr1 (164-199)||(19528364-19528399)
chr1 (164-193)||(40257403-40257432)
chr1 (167-196)||(52116821-52116850)
chr1 (164-196)||(9165235-9165267)
chr1 (164-196)||(15581181-15581213)
chr1 (164-196)||(17745296-17745328)
chr1 (164-196)||(31794304-31794336)
chr1 (164-200)||(33700809-33700845)
chr1 (164-200)||(37310012-37310048)
chr1 (164-200)||(41508835-41508871)
[»] chr3 (19 HSPs)
chr3 (1-163)||(29356767-29356928)
chr3 (164-200)||(10499145-10499181)
chr3 (167-200)||(2667869-2667902)
chr3 (167-200)||(16991549-16991582)
chr3 (164-196)||(8051218-8051250)
chr3 (164-200)||(31520641-31520677)
chr3 (164-194)||(24459994-24460024)
chr3 (164-197)||(36720385-36720418)
chr3 (164-196)||(1360925-1360957)
chr3 (164-196)||(3054998-3055030)
chr3 (164-200)||(4222145-4222181)
chr3 (164-200)||(5499443-5499479)
chr3 (164-196)||(9832501-9832533)
chr3 (164-196)||(26871544-26871576)
chr3 (164-196)||(27923083-27923115)
chr3 (164-200)||(28928915-28928951)
chr3 (164-200)||(31789006-31789042)
chr3 (164-196)||(42799787-42799819)
chr3 (164-200)||(46518632-46518668)
[»] chr6 (8 HSPs)
chr6 (163-200)||(6776643-6776680)
chr6 (163-196)||(10338214-10338247)
chr6 (167-196)||(21418477-21418506)
chr6 (164-196)||(12188343-12188375)
chr6 (164-200)||(30127404-30127440)
chr6 (164-200)||(32613176-32613212)
chr6 (164-196)||(33549108-33549140)
chr6 (163-199)||(33931982-33932018)
[»] chr4 (10 HSPs)
chr4 (164-200)||(9241061-9241097)
chr4 (164-200)||(51250558-51250594)
chr4 (164-196)||(19238617-19238649)
chr4 (164-200)||(27965546-27965582)
chr4 (164-196)||(55427240-55427272)
chr4 (164-196)||(29195099-29195131)
chr4 (164-196)||(37109391-37109423)
chr4 (164-200)||(37443706-37443742)
chr4 (164-196)||(37720254-37720286)
chr4 (164-200)||(47044721-47044757)
[»] chr7 (15 HSPs)
chr7 (164-196)||(41487366-41487398)
chr7 (164-200)||(48771942-48771978)
chr7 (164-202)||(39499753-39499791)
chr7 (164-193)||(30579339-30579368)
chr7 (167-196)||(43590914-43590943)
chr7 (167-199)||(4161295-4161327)
chr7 (164-196)||(5273630-5273662)
chr7 (164-196)||(15905713-15905745)
chr7 (166-194)||(19553460-19553488)
chr7 (164-200)||(21854552-21854588)
chr7 (164-196)||(23301642-23301674)
chr7 (164-196)||(25021375-25021407)
chr7 (164-196)||(26459450-26459482)
chr7 (164-196)||(39631848-39631880)
chr7 (164-196)||(42836041-42836073)
[»] chr5 (6 HSPs)
chr5 (164-196)||(21589292-21589324)
chr5 (163-196)||(16436621-16436654)
chr5 (164-196)||(16457814-16457846)
chr5 (164-196)||(21549177-21549209)
chr5 (164-200)||(26598528-26598564)
chr5 (164-200)||(29075785-29075821)
[»] chr2 (8 HSPs)
chr2 (164-196)||(37480079-37480111)
chr2 (164-196)||(7799075-7799107)
chr2 (164-200)||(16381690-16381726)
chr2 (164-200)||(16918614-16918650)
chr2 (164-196)||(23052563-23052595)
chr2 (164-196)||(37756011-37756043)
chr2 (164-196)||(42327435-42327467)
chr2 (164-196)||(42602558-42602590)
[»] scaffold1367 (1 HSPs)
scaffold1367 (166-200)||(876-910)
[»] scaffold0299 (1 HSPs)
scaffold0299 (166-200)||(11534-11568)
[»] chr8 (15 HSPs)
chr8 (164-202)||(8485003-8485041)
chr8 (164-196)||(968366-968398)
chr8 (164-196)||(2203496-2203528)
chr8 (164-196)||(3624584-3624616)
chr8 (164-200)||(4830491-4830527)
chr8 (164-196)||(6436595-6436627)
chr8 (164-196)||(6530811-6530843)
chr8 (164-196)||(16852344-16852376)
chr8 (164-196)||(18540302-18540334)
chr8 (164-196)||(19703527-19703559)
chr8 (164-196)||(22268973-22269005)
chr8 (164-196)||(23874422-23874454)
chr8 (164-196)||(26688869-26688901)
chr8 (164-196)||(29431015-29431047)
chr8 (164-196)||(29858089-29858121)
[»] scaffold0955 (1 HSPs)
scaffold0955 (164-196)||(3467-3499)
[»] scaffold0417 (1 HSPs)
scaffold0417 (164-200)||(10223-10259)
[»] scaffold0258 (1 HSPs)
scaffold0258 (164-196)||(15363-15395)
[»] scaffold0172 (1 HSPs)
scaffold0172 (164-200)||(32805-32841)
[»] scaffold0118 (1 HSPs)
scaffold0118 (164-200)||(41669-41705)
[»] scaffold0070 (1 HSPs)
scaffold0070 (164-196)||(38942-38974)
[»] scaffold0032 (1 HSPs)
scaffold0032 (164-200)||(112286-112322)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 49274113 - 49273951
Alignment:
Q  1 atgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49274113 atgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcct 49274014  T
Q  101 ctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49274013 ctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 49273951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 49268244 - 49268405
Alignment:
Q  1 atgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcct 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| |||||     
T  49268244 atgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttcca 49268343  T
Q  101 ctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 163  Q
    |||||||||| || |||||||| |||||||| |||| || |||||||||||||||||| ||||    
T  49268344 ctgttaccctgtg-cttccatgtagctttttgttggctgttagtttttaaatctggattaggt 49268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 49255520 - 49255681
Alignment:
Q  1 atgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcct 100  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||||||| |||||||||||| |  ||||| |||||||| ||||||    
T  49255520 atgtgcatgattcctgctctttttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttcttcctcttgttataagttcct 49255619  T
Q  101 ctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 163  Q
    ||||||||||| || ||||||| ||| |||| ||||||  |||||||||||||||||| ||||    
T  49255620 ctgttacccttgga-ttccatgtagcattttgttggttattagtttttaaatctggattaggt 49255681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 49273272 - 49273421
Alignment:
Q  5 gcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgt 104  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||| |||  ||||||||||||||| ||||| ||| | |||||||||  |||||| |    
T  49273272 gcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgttatagagtcctctat 49273371  T
Q  105 taccctttgacttccatgaagctttttcttggttgctagtttttaaatctg 155  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  49273372 tacccttt-acttccatgtagctttttcttggttgctagtttttaaatctg 49273421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 19528399 - 19528364
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatct 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  19528399 cacttgggttggcctggtggtattggcttgggatct 19528364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 40257403 - 40257432
Alignment:
Q  164 cacttgggttggcctggtggtattggcttg 193  Q
    ||||||||||||||||||||||||||||||    
T  40257403 cacttgggttggcctggtggtattggcttg 40257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 52116850 - 52116821
Alignment:
Q  167 ttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||||||||||||    
T  52116850 ttgggttggcctggtggtattggcttggga 52116821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 9165267 - 9165235
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  9165267 cacttgggttggcctagtggtattggcttggga 9165235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 15581213 - 15581181
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  15581213 cacttgggttggcctggtggtgttggcttggga 15581181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 17745328 - 17745296
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  17745328 cacttgggttggcctagtggtattggcttggga 17745296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 31794336 - 31794304
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  31794336 cacttgggttggcctagtggtattggcttggga 31794304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 33700845 - 33700809
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  33700845 cacttgggttggcctagtggtattggcttggaatctg 33700809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 37310048 - 37310012
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||||| |||| |||||||    
T  37310048 cacttgggttggcctggtggtattagcttcggatctg 37310012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 41508835 - 41508871
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  41508835 cacttgggttggcctggtggtactggtttgggatctg 41508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29356767 - 29356928
Alignment:
Q  1 atgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcct 100  Q
    ||||||||||||||||||||||||||||||||||| | || | ||  ||||  ||||||||||||||||||||||||| ||| | ||||||||  ||||     
T  29356767 atgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatagttcatcttgttataacttcca 29356866  T
Q  101 ctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 163  Q
    ||||||| ||||| |||||||  || ||||| ||||||||||||||| |||||| ||| ||||    
T  29356867 ctgttacactttg-cttccatatagttttttattggttgctagttttcaaatctagattaggt 29356928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 10499181 - 10499145
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  10499181 cacttgggttggcctggtggtattggcttgggatctg 10499145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 2667869 - 2667902
Alignment:
Q  167 ttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||||||||||||    
T  2667869 ttgggttggcctggtggtattggcttgggatctg 2667902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 16991549 - 16991582
Alignment:
Q  167 ttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||||||||||||    
T  16991549 ttgggttggcctggtggtattggcttgggatctg 16991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 8051218 - 8051250
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  8051218 cacttgggttggcctggtggtattggcttggga 8051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 31520677 - 31520641
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31520677 cacttgggttggcctggtggcattggcttgggatctg 31520641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 24459994 - 24460024
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgg 194  Q
    |||||||||||||||||||||||||||||||    
T  24459994 cacttgggttggcctggtggtattggcttgg 24460024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 36720385 - 36720418
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggat 197  Q
    |||||||||||| |||||||||||||||||||||    
T  36720385 cacttgggttggtctggtggtattggcttgggat 36720418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 1360925 - 1360957
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||| |||||||||||||    
T  1360925 cacttgggttggcctggtgttattggcttggga 1360957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 3054998 - 3055030
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  3054998 cacttgggttggcctggtggtgttggcttggga 3055030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 4222145 - 4222181
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||| | |||||||||||||||||||||    
T  4222145 cacttgggttggcttagtggtattggcttgggatctg 4222181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 5499479 - 5499443
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  5499479 cacttgggttggcctggtggtattgacttgagatctg 5499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 9832501 - 9832533
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||| ||||||||||||||||||    
T  9832501 cacttgggttggcccggtggtattggcttggga 9832533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 26871576 - 26871544
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  26871576 cacttgggttggcctggtggtgttggcttggga 26871544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27923115 - 27923083
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||| |||||||||||||||||||||||||||    
T  27923115 cacttaggttggcctggtggtattggcttggga 27923083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 28928951 - 28928915
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  28928951 cacttggattggcctagtggtattggcttgggatctg 28928915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 31789042 - 31789006
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  31789042 cacttgggttggcctagtgttattggcttgggatctg 31789006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 42799819 - 42799787
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  42799819 cacttgggttggcctggtggtgttggcttggga 42799787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 46518632 - 46518668
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||| | |||||||||||||||||||||    
T  46518632 cacttgggttggcatagtggtattggcttgggatctg 46518668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 6776680 - 6776643
Alignment:
Q  163 tcacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6776680 tcacttgggttggcctggtggtattggcttgggatctg 6776643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 10338247 - 10338214
Alignment:
Q  163 tcacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||| |||||||||||||||||||    
T  10338247 tcacttgggttggcatggtggtattggcttggga 10338214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 21418477 - 21418506
Alignment:
Q  167 ttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||||||||||||    
T  21418477 ttgggttggcctggtggtattggcttggga 21418506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 12188375 - 12188343
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  12188375 cacttgggttggcctagtggtattggcttggga 12188343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 30127404 - 30127440
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  30127404 cacttgggttggtctggtggtattggcttggggtctg 30127440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 32613212 - 32613176
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32613212 cacttgggttggcctggtggtattgacttggggtctg 32613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 33549108 - 33549140
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||| ||||||||||||||||||||    
T  33549108 cacttgggttggtctggtggtattggcttggga 33549140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 33932018 - 33931982
Alignment:
Q  163 tcacttgggttggcctggtggtattggcttgggatct 199  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  33932018 tcacttgggttgacctggtggtattgacttgggatct 33931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 9241097 - 9241061
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  9241097 cacttgggttggcctggtggtattggcttgggatctg 9241061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 51250594 - 51250558
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  51250594 cacttgggttggcctggtggtattggcttgggatctg 51250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 19238649 - 19238617
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  19238649 cacttgggttggcctggtggtattggcttggga 19238617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 27965582 - 27965546
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27965582 cacttgggttggcctagtggtattggcttgggatctg 27965546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 55427272 - 55427240
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  55427272 cacttgggttggcctggtggtattggcttggga 55427240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 29195099 - 29195131
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  29195099 cacttgggttggcctggtggtgttggcttggga 29195131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 37109423 - 37109391
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  37109423 cacttgggttggcctagtggtattggcttggga 37109391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 37443706 - 37443742
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  37443706 cacttgggttgacctagtggtattggcttgggatctg 37443742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 37720286 - 37720254
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||| |||||||||||||    
T  37720286 cacttgggttggcctggtgttattggcttggga 37720254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 47044721 - 47044757
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  47044721 cacttggattggcctggtggtattgacttgggatctg 47044757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 41487366 - 41487398
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  41487366 cacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 48771942 - 48771978
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||| |||||||||||||||||||||||    
T  48771942 cacttgggttggcttggtggtattggcttgggatctg 48771978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 39499791 - 39499753
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctgtg 202  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  39499791 cacttgggttggcctagtggtattggcttgggacctgtg 39499753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 30579339 - 30579368
Alignment:
Q  164 cacttgggttggcctggtggtattggcttg 193  Q
    ||||||||||||||||||||||||||||||    
T  30579339 cacttgggttggcctggtggtattggcttg 30579368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 43590914 - 43590943
Alignment:
Q  167 ttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||||||||||||    
T  43590914 ttgggttggcctggtggtattggcttggga 43590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 4161295 - 4161327
Alignment:
Q  167 ttgggttggcctggtggtattggcttgggatct 199  Q
    ||||||||| |||||||||||||||||||||||    
T  4161295 ttgggttggtctggtggtattggcttgggatct 4161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 5273662 - 5273630
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  5273662 cacttgggttggcctggtggtgttggcttggga 5273630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 15905745 - 15905713
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||| |||||||||||||||    
T  15905745 cacttgggttggcctggcggtattggcttggga 15905713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 19553460 - 19553488
Alignment:
Q  166 cttgggttggcctggtggtattggcttgg 194  Q
    |||||||||||||||||||||||||||||    
T  19553460 cttgggttggcctggtggtattggcttgg 19553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 21854552 - 21854588
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  21854552 cacttgggttggcctgatggtattggctagggatctg 21854588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 23301674 - 23301642
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||||||| |||||||    
T  23301674 cacttgggttggcctggtggtattgacttggga 23301642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 25021407 - 25021375
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  25021407 cacttgggttggcctagtggtattggcttggga 25021375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 26459482 - 26459450
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  26459482 cacttgggttggcctagtggtattggcttggga 26459450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 39631848 - 39631880
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  39631848 cacttgggttggcctagtggtattggcttggga 39631880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 42836073 - 42836041
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  42836073 cacttgggttggcctagtggtattggcttggga 42836041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 21589292 - 21589324
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  21589292 cacttgggttggcctggtggtattggcttggga 21589324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 16436621 - 16436654
Alignment:
Q  163 tcacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||| |||||||||||||||||    
T  16436621 tcacttgggttggcctagtggtattggcttggga 16436654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 16457814 - 16457846
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||| |||||||||||||||||||||||||||    
T  16457814 cacttaggttggcctggtggtattggcttggga 16457846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 21549209 - 21549177
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  21549209 cacttgggttggcctagtggtattggcttggga 21549177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 26598528 - 26598564
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  26598528 cacttggattggcctagtggtattggcttgggatctg 26598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 29075785 - 29075821
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||| |||| |||||||||||||||||||||    
T  29075785 cacttgggtttgcctagtggtattggcttgggatctg 29075821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 37480079 - 37480111
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||||||||||||||||||||||    
T  37480079 cacttgggttggcctggtggtattggcttggga 37480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 7799107 - 7799075
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||| |||||||||||||||||||||    
T  7799107 cacttgggttgtcctggtggtattggcttggga 7799075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 16381726 - 16381690
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  16381726 cacttgggttggcctagtggtataggcttgggatctg 16381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 16918650 - 16918614
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  16918650 cacttgggttggcctagtggtattggtttgggatctg 16918614  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 23052595 - 23052563
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||| |||||||||||||||||||||||||||    
T  23052595 cacttaggttggcctggtggtattggcttggga 23052563  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 37756043 - 37756011
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||| |||||||||||||||||||    
T  37756043 cacttgggttggcttggtggtattggcttggga 37756011  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 42327467 - 42327435
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  42327467 cacttgggttggcctagtggtattggcttggga 42327435  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 42602558 - 42602590
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  42602558 cacttgggttggcctagtggtattggcttggga 42602590  T

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Target: scaffold1367 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 910 - 876
Alignment:
Q  166 cttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||| ||||||||||||||||||||||||||||    
T  910 cttggggtggcctggtggtattggcttgggatctg 876  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 11534 - 11568
Alignment:
Q  166 cttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||| ||||||||||||||||||||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctg 11568  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 8485003 - 8485041
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctgtg 202  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  8485003 cacttgggttggcctggtggtatttgcttgggacctgtg 8485041  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 968366 - 968398
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||| ||||||||||||||||||||||||||    
T  968366 cacttgagttggcctggtggtattggcttggga 968398  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 2203496 - 2203528
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  2203496 cacttgggttggcctagtggtattggcttggga 2203528  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 3624584 - 3624616
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  3624584 cacttgggttggcctagtggtattggcttggga 3624616  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 4830491 - 4830527
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4830491 cacttgggttggcctggtggtatttgtttgggatctg 4830527  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 6436627 - 6436595
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||| |||||||||||||||||||||    
T  6436627 cacttgggttgccctggtggtattggcttggga 6436595  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 6530811 - 6530843
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  6530811 cacttgggttggcctggtggtgttggcttggga 6530843  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 16852344 - 16852376
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  16852344 cacttgggttggcctagtggtattggcttggga 16852376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 18540302 - 18540334
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  18540302 cacttgggttggcctagtggtattggcttggga 18540334  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 19703559 - 19703527
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  19703559 cacttgggttggcctagtggtattggcttggga 19703527  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 22269005 - 22268973
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  22269005 cacttgggttggcctggtggtgttggcttggga 22268973  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 23874454 - 23874422
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||| |||||||||||||||||    
T  23874454 cacttgggttggcctagtggtattggcttggga 23874422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 26688869 - 26688901
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||||||| |||||||||||    
T  26688869 cacttgggttggcctggtggtgttggcttggga 26688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 29431015 - 29431047
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||||||||||||| |||||||||||||||    
T  29431015 cacttgggttggcctggcggtattggcttggga 29431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 29858121 - 29858089
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    ||||||| |||||||||||||||||||||||||    
T  29858121 cacttggattggcctggtggtattggcttggga 29858089  T

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Target: scaffold0955 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 3467 - 3499
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||||| ||||||||||||||||||    
T  3467 cacttgggttggccgggtggtattggcttggga 3499  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 10223 - 10259
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||| || |||||||||||||||||    
T  10223 cacttgggttggcctgatgatattggcttgggatctg 10259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 15395 - 15363
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||| ||||||||||||||||||||    
T  15395 cacttgggttggtctggtggtattggcttggga 15363  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 32841 - 32805
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32841 cacttgggttggcctggtggtattggctgaggatctg 32805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 41705 - 41669
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41705 cacttgggttggcctagtggtattggcttgagatctg 41669  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 38974 - 38942
Alignment:
Q  164 cacttgggttggcctggtggtattggcttggga 196  Q
    |||||||||||| ||||||||||||||||||||    
T  38974 cacttgggttggtctggtggtattggcttggga 38942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 112286 - 112322
Alignment:
Q  164 cacttgggttggcctggtggtattggcttgggatctg 200  Q
    |||||||||||||||||| |||||||||||| |||||    
T  112286 cacttgggttggcctggttgtattggcttggaatctg 112322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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