View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20900_low_2 (Length: 458)

Name: NF20900_low_2
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20900_low_2
NF20900_low_2
[»] chr7 (9 HSPs)
chr7 (14-441)||(25452719-25453157)
chr7 (412-441)||(22081560-22081589)
chr7 (412-441)||(23058429-23058458)
chr7 (412-441)||(23058826-23058855)
chr7 (412-441)||(32068493-32068522)
chr7 (412-441)||(32934745-32934774)
chr7 (412-441)||(42617911-42617940)
chr7 (412-441)||(43266266-43266295)
chr7 (412-441)||(43266663-43266692)
[»] scaffold0771 (2 HSPs)
scaffold0771 (412-441)||(920-949)
scaffold0771 (412-441)||(1232-1261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (412-441)||(222186-222215)
[»] chr8 (6 HSPs)
chr8 (412-441)||(234137-234166)
chr8 (412-441)||(710548-710577)
chr8 (412-441)||(747760-747789)
chr8 (412-441)||(871655-871684)
chr8 (412-441)||(6472412-6472441)
chr8 (412-441)||(35634496-35634525)
[»] chr6 (3 HSPs)
chr6 (412-441)||(6517503-6517532)
chr6 (412-441)||(15913945-15913974)
chr6 (413-441)||(7905244-7905272)
[»] chr5 (4 HSPs)
chr5 (412-441)||(8875449-8875478)
chr5 (412-441)||(17544445-17544474)
chr5 (412-441)||(20153312-20153341)
chr5 (412-441)||(33871735-33871764)
[»] chr4 (11 HSPs)
chr4 (412-441)||(3032582-3032611)
chr4 (412-441)||(10407889-10407918)
chr4 (412-441)||(16605602-16605631)
chr4 (412-441)||(27069307-27069336)
chr4 (412-441)||(27149392-27149421)
chr4 (412-441)||(27891584-27891613)
chr4 (412-441)||(51859803-51859832)
chr4 (412-441)||(52573625-52573654)
chr4 (412-441)||(54858560-54858589)
chr4 (412-441)||(54858957-54858986)
chr4 (412-440)||(51859445-51859473)
[»] chr3 (9 HSPs)
chr3 (412-441)||(10294567-10294596)
chr3 (412-441)||(13948780-13948809)
chr3 (412-441)||(13949092-13949121)
chr3 (412-441)||(32306424-32306453)
chr3 (412-441)||(37778670-37778699)
chr3 (412-441)||(40788817-40788846)
chr3 (412-441)||(47551493-47551522)
chr3 (412-441)||(52032536-52032565)
chr3 (412-440)||(10294957-10294985)
[»] chr2 (5 HSPs)
chr2 (412-441)||(8710865-8710894)
chr2 (412-441)||(15604339-15604368)
chr2 (412-441)||(28226141-28226170)
chr2 (412-441)||(41587235-41587264)
chr2 (413-441)||(11830365-11830393)
[»] chr1 (14 HSPs)
chr1 (412-441)||(8898517-8898546)
chr1 (412-441)||(12906056-12906085)
chr1 (412-441)||(17188954-17188983)
chr1 (412-441)||(17189248-17189277)
chr1 (412-441)||(25885390-25885419)
chr1 (412-441)||(30326496-30326525)
chr1 (412-441)||(31050950-31050979)
chr1 (412-441)||(31058454-31058483)
chr1 (412-441)||(37929418-37929447)
chr1 (412-441)||(40714444-40714473)
chr1 (412-441)||(40714840-40714869)
chr1 (412-441)||(45750239-45750268)
chr1 (412-441)||(49955347-49955376)
chr1 (412-441)||(49955744-49955773)


Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 25452719 - 25453157
Alignment:
Q  14 gaatgagatgatgacgatgatgatactgtttaccctgctaaactagatactacatatcttcacaacaaaggagatgttgtaagttgctgtttagcattca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452719 gaatgagatgatgacgatgatgatactgtttaccctgctaaactagatactacatatcttcacaacaaaggagatgttgtaagttgctgtttagcattca 25452818  T
Q  114 tatgatattctgttaatgaaaaatgttttctatttaaataataaattgctagccttattcttccttgctgcttccagctatgtttgcacttggattattt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452819 tatgatattctgttaatgaaaaatgttttctatttaaataataaattgctagccttattcttccttgctgcttccagctatgtttgcacttggattattt 25452918  T
Q  214 aggatgatatgttc------------aaaacgaaacgagagaatgatctctgatagtgtttgaaataacctgtgtaccttacatgatatccactaaaaac 301  Q
    ||||||||||||||            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452919 aggatgatatgttcaatatatccactaaaacaaaacgagagaatgatctctgatagtgtttgaaataacctgtgtaccttacatgatatccactaaaaac 25453018  T
Q  302 caaaatcagactttaccttatatgtggaaatgctaatgcagagcagacgccagtacaagtatgatctatttttatagtgtttccggtgacctactacata 401  Q
    ||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25453019 caaaatcagac-ttactacatatgtggaaatgctaatgcagagcagacgccagtacaagtatgatctatttttatagtgtttccggtgacctactacata 25453117  T
Q  402 atatgcagccggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25453118 atatgcagccggcttaatgatgtgtttcgtccttgcaatt 25453157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 22081560 - 22081589
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  22081560 ggcttaatgatgtgtttcgtccttgcaatt 22081589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 23058429 - 23058458
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  23058429 ggcttaatgatgtgtttcgtccttgcaatt 23058458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 23058855 - 23058826
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  23058855 ggcttaatgatgtgtttcgtccttgcaatt 23058826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 32068522 - 32068493
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  32068522 ggcttaatgatgtgtttcgtccttgcaatt 32068493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 32934774 - 32934745
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  32934774 ggcttaatgatgtgtttcgtccttgcaatt 32934745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 42617911 - 42617940
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  42617911 ggcttaatgatgtgtttcgtccttgcaatt 42617940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 43266266 - 43266295
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  43266266 ggcttaatgatgtgtttcgtccttgcaatt 43266295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 43266692 - 43266663
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  43266692 ggcttaatgatgtgtttcgtccttgcaatt 43266663  T

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Target: scaffold0771 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 920 - 949
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  920 ggcttaatgatgtgtttcgtccttgcaatt 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 1261 - 1232
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  1261 ggcttaatgatgtgtttcgtccttgcaatt 1232  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 222215 - 222186
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  222215 ggcttaatgatgtgtttcgtccttgcaatt 222186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 234166 - 234137
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  234166 ggcttaatgatgtgtttcgtccttgcaatt 234137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 710577 - 710548
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  710577 ggcttaatgatgtgtttcgtccttgcaatt 710548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 747789 - 747760
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  747789 ggcttaatgatgtgtttcgtccttgcaatt 747760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 871684 - 871655
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  871684 ggcttaatgatgtgtttcgtccttgcaatt 871655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 6472441 - 6472412
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  6472441 ggcttaatgatgtgtttcgtccttgcaatt 6472412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 35634525 - 35634496
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  35634525 ggcttaatgatgtgtttcgtccttgcaatt 35634496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 6517503 - 6517532
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  6517503 ggcttaatgatgtgtttcgtccttgcaatt 6517532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 15913974 - 15913945
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  15913974 ggcttaatgatgtgtttcgtccttgcaatt 15913945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 7905244 - 7905272
Alignment:
Q  413 gcttaatgatgtgtttcgtccttgcaatt 441  Q
    |||||||||||||||||||||||||||||    
T  7905244 gcttaatgatgtgtttcgtccttgcaatt 7905272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 8875449 - 8875478
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  8875449 ggcttaatgatgtgtttcgtccttgcaatt 8875478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 17544474 - 17544445
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  17544474 ggcttaatgatgtgtttcgtccttgcaatt 17544445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 20153341 - 20153312
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  20153341 ggcttaatgatgtgtttcgtccttgcaatt 20153312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 33871764 - 33871735
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  33871764 ggcttaatgatgtgtttcgtccttgcaatt 33871735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 3032582 - 3032611
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  3032582 ggcttaatgatgtgtttcgtccttgcaatt 3032611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 10407889 - 10407918
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  10407889 ggcttaatgatgtgtttcgtccttgcaatt 10407918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 16605602 - 16605631
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  16605602 ggcttaatgatgtgtttcgtccttgcaatt 16605631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 27069336 - 27069307
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  27069336 ggcttaatgatgtgtttcgtccttgcaatt 27069307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 27149421 - 27149392
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  27149421 ggcttaatgatgtgtttcgtccttgcaatt 27149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 27891584 - 27891613
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  27891584 ggcttaatgatgtgtttcgtccttgcaatt 27891613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 51859832 - 51859803
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  51859832 ggcttaatgatgtgtttcgtccttgcaatt 51859803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 52573654 - 52573625
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  52573654 ggcttaatgatgtgtttcgtccttgcaatt 52573625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 54858560 - 54858589
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  54858560 ggcttaatgatgtgtttcgtccttgcaatt 54858589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 54858986 - 54858957
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  54858986 ggcttaatgatgtgtttcgtccttgcaatt 54858957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 51859445 - 51859473
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaat 440  Q
    |||||||||||||||||||||||||||||    
T  51859445 ggcttaatgatgtgtttcgtccttgcaat 51859473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 10294567 - 10294596
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  10294567 ggcttaatgatgtgtttcgtccttgcaatt 10294596  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 13948780 - 13948809
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  13948780 ggcttaatgatgtgtttcgtccttgcaatt 13948809  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 13949121 - 13949092
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  13949121 ggcttaatgatgtgtttcgtccttgcaatt 13949092  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 32306424 - 32306453
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  32306424 ggcttaatgatgtgtttcgtccttgcaatt 32306453  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 37778699 - 37778670
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  37778699 ggcttaatgatgtgtttcgtccttgcaatt 37778670  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 40788846 - 40788817
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  40788846 ggcttaatgatgtgtttcgtccttgcaatt 40788817  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 47551493 - 47551522
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  47551493 ggcttaatgatgtgtttcgtccttgcaatt 47551522  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 52032565 - 52032536
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  52032565 ggcttaatgatgtgtttcgtccttgcaatt 52032536  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 10294985 - 10294957
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaat 440  Q
    |||||||||||||||||||||||||||||    
T  10294985 ggcttaatgatgtgtttcgtccttgcaat 10294957  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 8710894 - 8710865
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  8710894 ggcttaatgatgtgtttcgtccttgcaatt 8710865  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 15604339 - 15604368
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  15604339 ggcttaatgatgtgtttcgtccttgcaatt 15604368  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 28226170 - 28226141
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  28226170 ggcttaatgatgtgtttcgtccttgcaatt 28226141  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 41587235 - 41587264
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  41587235 ggcttaatgatgtgtttcgtccttgcaatt 41587264  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 11830365 - 11830393
Alignment:
Q  413 gcttaatgatgtgtttcgtccttgcaatt 441  Q
    |||||||||||||||||||||||||||||    
T  11830365 gcttaatgatgtgtttcgtccttgcaatt 11830393  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 8898517 - 8898546
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  8898517 ggcttaatgatgtgtttcgtccttgcaatt 8898546  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 12906085 - 12906056
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  12906085 ggcttaatgatgtgtttcgtccttgcaatt 12906056  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 17188954 - 17188983
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  17188954 ggcttaatgatgtgtttcgtccttgcaatt 17188983  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 17189277 - 17189248
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  17189277 ggcttaatgatgtgtttcgtccttgcaatt 17189248  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 25885419 - 25885390
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  25885419 ggcttaatgatgtgtttcgtccttgcaatt 25885390  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 30326496 - 30326525
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  30326496 ggcttaatgatgtgtttcgtccttgcaatt 30326525  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 31050950 - 31050979
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  31050950 ggcttaatgatgtgtttcgtccttgcaatt 31050979  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 31058483 - 31058454
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  31058483 ggcttaatgatgtgtttcgtccttgcaatt 31058454  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 37929418 - 37929447
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  37929418 ggcttaatgatgtgtttcgtccttgcaatt 37929447  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 40714444 - 40714473
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  40714444 ggcttaatgatgtgtttcgtccttgcaatt 40714473  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 40714869 - 40714840
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  40714869 ggcttaatgatgtgtttcgtccttgcaatt 40714840  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 45750268 - 45750239
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  45750268 ggcttaatgatgtgtttcgtccttgcaatt 45750239  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 49955347 - 49955376
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  49955347 ggcttaatgatgtgtttcgtccttgcaatt 49955376  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 49955773 - 49955744
Alignment:
Q  412 ggcttaatgatgtgtttcgtccttgcaatt 441  Q
    ||||||||||||||||||||||||||||||    
T  49955773 ggcttaatgatgtgtttcgtccttgcaatt 49955744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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