View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20900_low_3 (Length: 400)
Name: NF20900_low_3
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 43602786 - 43603159
Alignment:
| Q |
10 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
109 |
Q |
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| T |
43602786 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
43602885 |
T |
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| Q |
110 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
209 |
Q |
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| T |
43602886 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
43602985 |
T |
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| Q |
210 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
309 |
Q |
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| T |
43602986 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
43603085 |
T |
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| Q |
310 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaatt |
383 |
Q |
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| T |
43603086 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaatt |
43603159 |
T |
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