View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20900_low_5 (Length: 345)

Name: NF20900_low_5
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20900_low_5
NF20900_low_5
[»] chr7 (8 HSPs)
chr7 (217-270)||(32262999-32263053)
chr7 (218-267)||(2915995-2916044)
chr7 (217-260)||(36755007-36755050)
chr7 (217-260)||(36760804-36760847)
chr7 (218-267)||(48980480-48980530)
chr7 (216-260)||(36803829-36803874)
chr7 (218-246)||(8663287-8663315)
chr7 (219-247)||(31890139-31890167)
[»] chr2 (4 HSPs)
chr2 (218-267)||(13115392-13115441)
chr2 (222-270)||(17142827-17142876)
chr2 (219-263)||(35820323-35820368)
chr2 (219-267)||(21929465-21929513)
[»] scaffold0045 (2 HSPs)
scaffold0045 (219-270)||(63856-63908)
scaffold0045 (219-270)||(71188-71240)
[»] chr6 (3 HSPs)
chr6 (217-260)||(1514186-1514230)
chr6 (220-260)||(17382079-17382120)
chr6 (217-260)||(32053780-32053824)
[»] chr5 (3 HSPs)
chr5 (220-267)||(20175720-20175768)
chr5 (217-260)||(5015273-5015316)
chr5 (217-270)||(27721690-27721744)
[»] scaffold0040 (1 HSPs)
scaffold0040 (218-260)||(56777-56820)
[»] scaffold0001 (1 HSPs)
scaffold0001 (216-258)||(505002-505044)
[»] chr8 (2 HSPs)
chr8 (218-267)||(14303158-14303208)
chr8 (218-267)||(33445563-33445613)
[»] chr4 (5 HSPs)
chr4 (215-260)||(21318278-21318324)
chr4 (216-260)||(50362164-50362209)
chr4 (217-260)||(2186358-2186402)
chr4 (218-258)||(39606594-39606634)
chr4 (217-260)||(52270055-52270099)
[»] chr3 (4 HSPs)
chr3 (216-260)||(16980379-16980424)
chr3 (216-260)||(51250258-51250303)
chr3 (215-258)||(39481131-39481175)
chr3 (227-270)||(43796852-43796896)
[»] chr1 (2 HSPs)
chr1 (216-260)||(42045397-42045442)
chr1 (215-247)||(41763194-41763226)


Alignment Details
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 32262999 - 32263053
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaaagt 270  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||    
T  32262999 atgtcctcgtgagcttagctcagttggtatagacaatgtataatatatacaaagt 32263053  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 2915995 - 2916044
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggtaggacaatgtataatacatacaa 267  Q
    |||||||| |||  ||||||||||||||||||||||||||||| ||||||    
T  2915995 tgtcctcgtgagtatagctcagttggtaggacaatgtataatatatacaa 2916044  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 36755007 - 36755050
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggtaggacaatgtataata 260  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  36755007 atgtcctcgtgagcttaactcagttggtaggacaatgcataata 36755050  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 36760804 - 36760847
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggtaggacaatgtataata 260  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  36760804 atgtcctcgtgagcttaactcagttggtaggacaatgcataata 36760847  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 48980480 - 48980530
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaa 267  Q
    |||||||| ||||||||||||||||||| |||||||| |||||| ||||||    
T  48980480 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatacaa 48980530  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 36803829 - 36803874
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggtag-gacaatgtataata 260  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  36803829 tatgtcctcgtgagcttagctcagttggtagagacaatgcataata 36803874  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 8663287 - 8663315
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggtag 246  Q
    |||||||||||||||||||||||||||||    
T  8663287 tgtcctcgcgagcttagctcagttggtag 8663315  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 31890139 - 31890167
Alignment:
Q  219 gtcctcgcgagcttagctcagttggtagg 247  Q
    |||||||||||||||||||||||||||||    
T  31890139 gtcctcgcgagcttagctcagttggtagg 31890167  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 13115392 - 13115441
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggtaggacaatgtataatacatacaa 267  Q
    ||||| || |||||||||||||||||||||||||||||||| | ||||||    
T  13115392 tgtccacgtgagcttagctcagttggtaggacaatgtataaaatatacaa 13115441  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 17142827 - 17142876
Alignment:
Q  222 ctcgcgagcttagctcagttggtag-gacaatgtataatacatacaaagt 270  Q
    |||| |||||||||||||||||||| |||||||||||||| || ||||||    
T  17142827 ctcgtgagcttagctcagttggtagtgacaatgtataatatatgcaaagt 17142876  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 35820368 - 35820323
Alignment:
Q  219 gtcctcgcgagcttagctcagttggta-ggacaatgtataatacat 263  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||    
T  35820368 gtcctcgtgagcttagctcagttggtagggacaatgcataatacat 35820323  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 21929465 - 21929513
Alignment:
Q  219 gtcctcgcgagcttagctcagttggtaggacaatgtataatacatacaa 267  Q
    ||||||| |||||||||||||||||| |||||||| |||| | ||||||    
T  21929465 gtcctcgtgagcttagctcagttggttggacaatgcataaaatatacaa 21929513  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 63856 - 63908
Alignment:
Q  219 gtcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaaagt 270  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||    
T  63856 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagt 63908  T

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Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 71188 - 71240
Alignment:
Q  219 gtcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaaagt 270  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||    
T  71188 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagt 71240  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 1514230 - 1514186
Alignment:
Q  217 atgtcctcgcgagcttagctcagttgg-taggacaatgtataata 260  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||    
T  1514230 atgtcctcgtgagcttagctcagttggttaggacaatgtataata 1514186  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 17382079 - 17382120
Alignment:
Q  220 tcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  17382079 tcctcgtgagcttagctcagttggtatggacaatgtataata 17382120  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 32053780 - 32053824
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||    
T  32053780 atgtcctcgtgagcttagctcagttggtatggacaatgcataata 32053824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 20175720 - 20175768
Alignment:
Q  220 tcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaa 267  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  20175720 tcctcgtgagcttagctcagttggtatggacaatgtataatatatacaa 20175768  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 5015273 - 5015316
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggtaggacaatgtataata 260  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||    
T  5015273 atgtcctcgtgagtttagctcagttggtaggacaatgaataata 5015316  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 27721744 - 27721690
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggtagg-acaatgtataatacatacaaagt 270  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||| || ||||||    
T  27721744 atgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatgcaaagt 27721690  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 56777 - 56820
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  56777 tgtcctcgtgagcttagctcagttggtatggacaatgtataata 56820  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 505002 - 505044
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggtaggacaatgtataa 258  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||    
T  505002 tatgtcatcgtgagcttagctcagttggtaggacaatgcataa 505044  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 14303158 - 14303208
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggta-ggacaatgtataatacatacaa 267  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| ||||||    
T  14303158 tgtcctcgtgagtttagctcagttggtatggacaatgtataatatatacaa 14303208  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 33445563 - 33445613
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggtagg-acaatgtataatacatacaa 267  Q
    |||||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  33445563 tgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatacaa 33445613  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 21318324 - 21318278
Alignment:
Q  215 gtatgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  21318324 gtatgtcctcgcgagcttaactcagttggtagggacaatgcataata 21318278  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 50362209 - 50362164
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  50362209 tatgtcctcgtgagcttagctcagttggtagggacaatgcataata 50362164  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 2186402 - 2186358
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||    
T  2186402 atgtcctcgtgagcttagctcagttggtatggacaatgcataata 2186358  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 39606634 - 39606594
Alignment:
Q  218 tgtcctcgcgagcttagctcagttggtaggacaatgtataa 258  Q
    |||||||| |||||||||||||||||| | |||||||||||    
T  39606634 tgtcctcgtgagcttagctcagttggttgaacaatgtataa 39606594  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 52270099 - 52270055
Alignment:
Q  217 atgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||    
T  52270099 atgtcctcgtgagcttagctcagttggtatggacaatgcataata 52270055  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 16980424 - 16980379
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggt-aggacaatgtataata 260  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||    
T  16980424 tatgtcctcgtgagcttagctcagttggtaaggacaatgcataata 16980379  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 51250303 - 51250258
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggt-aggacaatgtataata 260  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  51250303 tatgtcctcgtgagcttaactcagttggtaaggacaatgtataata 51250258  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 39481131 - 39481175
Alignment:
Q  215 gtatgtcctcgcgagcttagctcagttggta-ggacaatgtataa 258  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||    
T  39481131 gtatgtcctcgtgagcttagctcagttggtatggacaatgcataa 39481175  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 43796896 - 43796852
Alignment:
Q  227 gagcttagctcagttggta-ggacaatgtataatacatacaaagt 270  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  43796896 gagcttaactcagttggtatggacaatgtataatacatgcaaagt 43796852  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 42045442 - 42045397
Alignment:
Q  216 tatgtcctcgcgagcttagctcagttggta-ggacaatgtataata 260  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  42045442 tatgtcctcgtgagcttagctcagttggtatggacaatgcataata 42045397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 41763226 - 41763194
Alignment:
Q  215 gtatgtcctcgcgagcttagctcagttggtagg 247  Q
    ||||||||||| |||||||||||||||||||||    
T  41763226 gtatgtcctcgtgagcttagctcagttggtagg 41763194  T

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