View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20900_low_7 (Length: 313)
Name: NF20900_low_7
Description: NF20900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20900_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 43987064 - 43986778
Alignment:
| Q |
19 |
atttgtttgtttcaattaaataatgactagttctcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacata |
118 |
Q |
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| T |
43987064 |
atttgtttgtttcaattcaataatgactagtactcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacata |
43986965 |
T |
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| Q |
119 |
tctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986964 |
tctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaa |
43986865 |
T |
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| Q |
219 |
ctatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986864 |
ctatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct |
43986778 |
T |
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