View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20901_high_11 (Length: 326)
Name: NF20901_high_11
Description: NF20901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20901_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 31733396 - 31733101
Alignment:
| Q |
11 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnnnn |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31733396 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctgaacacatagcataagatcctaccaatttcacagcatagttcagtcaaaaaa |
31733297 |
T |
|
| Q |
111 |
nnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaata |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31733296 |
aaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaata |
31733197 |
T |
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| Q |
211 |
agcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31733196 |
agcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
31733101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 31735962 - 31735793
Alignment:
| Q |
123 |
acaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaataagcaaaaccaca |
222 |
Q |
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||||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
31735962 |
acaccacaaaaacttgatgaaactccaattcaggatcacaacatatagtcatacaaaggtcaaatgccacaactaaaaactccaaataagcaaaacaaca |
31735863 |
T |
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| Q |
223 |
cagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacac-ttgtagtgtcacgttttt |
293 |
Q |
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||| |||||||||||||||||||| |||||||||| ||| |||||||| || ||| ||||||| |||||| |
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| T |
31735862 |
cag--gagtacaaaacaaaaggaatgagtagaataaaaacaattgcctcagacgttgcagtgtcatgttttt |
31735793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 31736065 - 31736020
Alignment:
| Q |
11 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggat |
56 |
Q |
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||||||||||| | ||||||| ||||||||||||||||| |||||| |
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| T |
31736065 |
cataggcaggaccaagaagggatcacaatatcacaaatcacgggat |
31736020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 6498387 - 6498092
Alignment:
| Q |
11 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnnnn |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6498387 |
cataggcaggatcaagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtaaaaaaa |
6498288 |
T |
|
| Q |
111 |
nnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaata |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6498287 |
aaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaata |
6498188 |
T |
|
| Q |
211 |
agcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
306 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6498187 |
agcaaaacaacacagcagagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
6498092 |
T |
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