View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20901_high_15 (Length: 313)

Name: NF20901_high_15
Description: NF20901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20901_high_15
NF20901_high_15
[»] chr7 (9 HSPs)
chr7 (29-302)||(25452873-25453157)
chr7 (29-58)||(22081560-22081589)
chr7 (29-58)||(23058429-23058458)
chr7 (29-58)||(23058826-23058855)
chr7 (29-58)||(32068493-32068522)
chr7 (29-58)||(32934745-32934774)
chr7 (29-58)||(42617911-42617940)
chr7 (29-58)||(43266266-43266295)
chr7 (29-58)||(43266663-43266692)
[»] scaffold0771 (2 HSPs)
scaffold0771 (29-58)||(920-949)
scaffold0771 (29-58)||(1232-1261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (29-58)||(222186-222215)
[»] chr8 (6 HSPs)
chr8 (29-58)||(234137-234166)
chr8 (29-58)||(710548-710577)
chr8 (29-58)||(747760-747789)
chr8 (29-58)||(871655-871684)
chr8 (29-58)||(6472412-6472441)
chr8 (29-58)||(35634496-35634525)
[»] chr6 (3 HSPs)
chr6 (29-58)||(6517503-6517532)
chr6 (29-58)||(15913945-15913974)
chr6 (29-57)||(7905244-7905272)
[»] chr5 (4 HSPs)
chr5 (29-58)||(8875449-8875478)
chr5 (29-58)||(17544445-17544474)
chr5 (29-58)||(20153312-20153341)
chr5 (29-58)||(33871735-33871764)
[»] chr4 (11 HSPs)
chr4 (29-58)||(3032582-3032611)
chr4 (29-58)||(10407889-10407918)
chr4 (29-58)||(16605602-16605631)
chr4 (29-58)||(27069307-27069336)
chr4 (29-58)||(27149392-27149421)
chr4 (29-58)||(27891584-27891613)
chr4 (29-58)||(51859803-51859832)
chr4 (29-58)||(52573625-52573654)
chr4 (29-58)||(54858560-54858589)
chr4 (29-58)||(54858957-54858986)
chr4 (30-58)||(51859445-51859473)
[»] chr3 (9 HSPs)
chr3 (29-58)||(10294567-10294596)
chr3 (29-58)||(13948780-13948809)
chr3 (29-58)||(13949092-13949121)
chr3 (29-58)||(32306424-32306453)
chr3 (29-58)||(37778670-37778699)
chr3 (29-58)||(40788817-40788846)
chr3 (29-58)||(47551493-47551522)
chr3 (29-58)||(52032536-52032565)
chr3 (30-58)||(10294957-10294985)
[»] chr2 (5 HSPs)
chr2 (29-58)||(8710865-8710894)
chr2 (29-58)||(15604339-15604368)
chr2 (29-58)||(28226141-28226170)
chr2 (29-58)||(41587235-41587264)
chr2 (29-57)||(11830365-11830393)
[»] chr1 (14 HSPs)
chr1 (29-58)||(8898517-8898546)
chr1 (29-58)||(12906056-12906085)
chr1 (29-58)||(17188954-17188983)
chr1 (29-58)||(17189248-17189277)
chr1 (29-58)||(25885390-25885419)
chr1 (29-58)||(30326496-30326525)
chr1 (29-58)||(31050950-31050979)
chr1 (29-58)||(31058454-31058483)
chr1 (29-58)||(37929418-37929447)
chr1 (29-58)||(40714444-40714473)
chr1 (29-58)||(40714840-40714869)
chr1 (29-58)||(45750239-45750268)
chr1 (29-58)||(49955347-49955376)
chr1 (29-58)||(49955744-49955773)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 25453157 - 25452873
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagccggctgcatattatgtagtaggtcaccggaaacactataaaaatagatcatacttgtactggcgtctgctc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25453157 aattgcaaggacgaaacacatcattaagccggctgcatattatgtagtaggtcaccggaaacactataaaaatagatcatacttgtactggcgtctgctc 25453058  T
Q  129 tgcattagcatttccacatataaggtaaagtctgattttggtttttagtggatatcatgtaaggtacacaggttatttcaaacactatcagagatcattc 228  Q
    |||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25453057 tgcattagcatttccacatatgtagt-aagtctgattttggtttttagtggatatcatgtaaggtacacaggttatttcaaacactatcagagatcattc 25452959  T
Q  229 tctcgtttcgtt------------ttgaacatatcatcctaaataatccaagtgcaaacatagctggaagcagcaaggaagaataa 302  Q
    |||||||| |||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452958 tctcgttttgttttagtggatatattgaacatatcatcctaaataatccaagtgcaaacatagctggaagcagcaaggaagaataa 25452873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 22081589 - 22081560
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  22081589 aattgcaaggacgaaacacatcattaagcc 22081560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 23058458 - 23058429
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  23058458 aattgcaaggacgaaacacatcattaagcc 23058429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 23058826 - 23058855
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  23058826 aattgcaaggacgaaacacatcattaagcc 23058855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 32068493 - 32068522
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  32068493 aattgcaaggacgaaacacatcattaagcc 32068522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 32934745 - 32934774
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  32934745 aattgcaaggacgaaacacatcattaagcc 32934774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 42617940 - 42617911
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  42617940 aattgcaaggacgaaacacatcattaagcc 42617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 43266295 - 43266266
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  43266295 aattgcaaggacgaaacacatcattaagcc 43266266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 43266663 - 43266692
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  43266663 aattgcaaggacgaaacacatcattaagcc 43266692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 949 - 920
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  949 aattgcaaggacgaaacacatcattaagcc 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 1232 - 1261
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  1232 aattgcaaggacgaaacacatcattaagcc 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 222186 - 222215
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  222186 aattgcaaggacgaaacacatcattaagcc 222215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 234137 - 234166
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  234137 aattgcaaggacgaaacacatcattaagcc 234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 710548 - 710577
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  710548 aattgcaaggacgaaacacatcattaagcc 710577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 747760 - 747789
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  747760 aattgcaaggacgaaacacatcattaagcc 747789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 871655 - 871684
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  871655 aattgcaaggacgaaacacatcattaagcc 871684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 6472412 - 6472441
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  6472412 aattgcaaggacgaaacacatcattaagcc 6472441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 35634496 - 35634525
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  35634496 aattgcaaggacgaaacacatcattaagcc 35634525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 6517532 - 6517503
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  6517532 aattgcaaggacgaaacacatcattaagcc 6517503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 15913945 - 15913974
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  15913945 aattgcaaggacgaaacacatcattaagcc 15913974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 7905272 - 7905244
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagc 57  Q
    |||||||||||||||||||||||||||||    
T  7905272 aattgcaaggacgaaacacatcattaagc 7905244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 8875478 - 8875449
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  8875478 aattgcaaggacgaaacacatcattaagcc 8875449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 17544445 - 17544474
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  17544445 aattgcaaggacgaaacacatcattaagcc 17544474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 20153312 - 20153341
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  20153312 aattgcaaggacgaaacacatcattaagcc 20153341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 33871735 - 33871764
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  33871735 aattgcaaggacgaaacacatcattaagcc 33871764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 3032611 - 3032582
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  3032611 aattgcaaggacgaaacacatcattaagcc 3032582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 10407918 - 10407889
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  10407918 aattgcaaggacgaaacacatcattaagcc 10407889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 16605631 - 16605602
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  16605631 aattgcaaggacgaaacacatcattaagcc 16605602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 27069307 - 27069336
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  27069307 aattgcaaggacgaaacacatcattaagcc 27069336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 27149392 - 27149421
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  27149392 aattgcaaggacgaaacacatcattaagcc 27149421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 27891613 - 27891584
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  27891613 aattgcaaggacgaaacacatcattaagcc 27891584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 51859803 - 51859832
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  51859803 aattgcaaggacgaaacacatcattaagcc 51859832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 52573625 - 52573654
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  52573625 aattgcaaggacgaaacacatcattaagcc 52573654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 54858589 - 54858560
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  54858589 aattgcaaggacgaaacacatcattaagcc 54858560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 54858957 - 54858986
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  54858957 aattgcaaggacgaaacacatcattaagcc 54858986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 51859473 - 51859445
Alignment:
Q  30 attgcaaggacgaaacacatcattaagcc 58  Q
    |||||||||||||||||||||||||||||    
T  51859473 attgcaaggacgaaacacatcattaagcc 51859445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 10294596 - 10294567
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  10294596 aattgcaaggacgaaacacatcattaagcc 10294567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 13948809 - 13948780
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  13948809 aattgcaaggacgaaacacatcattaagcc 13948780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 13949092 - 13949121
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  13949092 aattgcaaggacgaaacacatcattaagcc 13949121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 32306453 - 32306424
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  32306453 aattgcaaggacgaaacacatcattaagcc 32306424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 37778670 - 37778699
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  37778670 aattgcaaggacgaaacacatcattaagcc 37778699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 40788817 - 40788846
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  40788817 aattgcaaggacgaaacacatcattaagcc 40788846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 47551522 - 47551493
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  47551522 aattgcaaggacgaaacacatcattaagcc 47551493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 52032536 - 52032565
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  52032536 aattgcaaggacgaaacacatcattaagcc 52032565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 10294957 - 10294985
Alignment:
Q  30 attgcaaggacgaaacacatcattaagcc 58  Q
    |||||||||||||||||||||||||||||    
T  10294957 attgcaaggacgaaacacatcattaagcc 10294985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 8710865 - 8710894
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  8710865 aattgcaaggacgaaacacatcattaagcc 8710894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 15604368 - 15604339
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  15604368 aattgcaaggacgaaacacatcattaagcc 15604339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 28226141 - 28226170
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  28226141 aattgcaaggacgaaacacatcattaagcc 28226170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 41587264 - 41587235
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  41587264 aattgcaaggacgaaacacatcattaagcc 41587235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 11830393 - 11830365
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagc 57  Q
    |||||||||||||||||||||||||||||    
T  11830393 aattgcaaggacgaaacacatcattaagc 11830365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 8898546 - 8898517
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  8898546 aattgcaaggacgaaacacatcattaagcc 8898517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 12906056 - 12906085
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  12906056 aattgcaaggacgaaacacatcattaagcc 12906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 17188983 - 17188954
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  17188983 aattgcaaggacgaaacacatcattaagcc 17188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 17189248 - 17189277
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  17189248 aattgcaaggacgaaacacatcattaagcc 17189277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 25885390 - 25885419
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  25885390 aattgcaaggacgaaacacatcattaagcc 25885419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 30326525 - 30326496
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  30326525 aattgcaaggacgaaacacatcattaagcc 30326496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 31050979 - 31050950
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  31050979 aattgcaaggacgaaacacatcattaagcc 31050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 31058454 - 31058483
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  31058454 aattgcaaggacgaaacacatcattaagcc 31058483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 37929447 - 37929418
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  37929447 aattgcaaggacgaaacacatcattaagcc 37929418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 40714473 - 40714444
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  40714473 aattgcaaggacgaaacacatcattaagcc 40714444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 40714840 - 40714869
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  40714840 aattgcaaggacgaaacacatcattaagcc 40714869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 45750239 - 45750268
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  45750239 aattgcaaggacgaaacacatcattaagcc 45750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 49955376 - 49955347
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  49955376 aattgcaaggacgaaacacatcattaagcc 49955347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 49955744 - 49955773
Alignment:
Q  29 aattgcaaggacgaaacacatcattaagcc 58  Q
    ||||||||||||||||||||||||||||||    
T  49955744 aattgcaaggacgaaacacatcattaagcc 49955773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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