View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20901_high_6 (Length: 376)
Name: NF20901_high_6
Description: NF20901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20901_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 39969529 - 39969161
Alignment:
| Q |
8 |
agcatagggagatggattggtgggcactggcactgaaccaaagacgttggcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
107 |
Q |
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| T |
39969529 |
agcagagggagatggattggtgggcactggcactgaaccaaagacgttggcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
39969430 |
T |
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| Q |
108 |
tagttaatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtag |
207 |
Q |
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| T |
39969429 |
tagttaatagtatcataatttttcagaacttccatttgtgtggcaaaggaaaatgaatgaaattacaagtatatatgtatggaagatattcaccttgtag |
39969330 |
T |
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| Q |
208 |
atggatattgacatgttcccgtgcctacaaaatttaaacaagttaatacgatcatcaaagttctcaacaaccaaaagtagaaaaaagtagaatgaattga |
307 |
Q |
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| T |
39969329 |
atggatattgacatgttcccgtgcctacaaaatttaaacaagttaatacgatcatcaaagttctcaacaaccaaaagtagaaaaaagtagaatgaattga |
39969230 |
T |
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| Q |
308 |
ataatttcatccttgtataaaaccttgtttataagaaaataaagttagccaaatgagttcaaatcttaa |
376 |
Q |
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| T |
39969229 |
ataatttcatccttgtataaaaccttgtttttaagaaaataaagttagccaaatgagttcaaatcttaa |
39969161 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 16122938 - 16122888
Alignment:
| Q |
57 |
gcaccacttgagtttgtcgtgttcaagattgatgaacttgtactgcaattt |
107 |
Q |
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| T |
16122938 |
gcaccacttgtgtttgttgtgtttaagagtgatgaacttgtactgcaattt |
16122888 |
T |
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