View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_high_10 (Length: 386)
Name: NF20902_high_10
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 41249765 - 41250128
Alignment:
| Q |
1 |
cggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatataaaaaaccagttgaataatgtatatttcatgctatgcaaaacatcataggat |
100 |
Q |
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| T |
41249765 |
cggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatatataaaaccagttgaataatgtatatttcatgctatgcaaaacatcagaggat |
41249864 |
T |
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| Q |
101 |
cactacattacaaatcacccctgtatcgattcatctttaaactcatcaaaatttgaaaatgtactcataatttttgtgggacatcaatcatcacaatatc |
200 |
Q |
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| T |
41249865 |
cactacattacaaatcccccctgtatcgattcatctttaaactcatcaaaatttgaaaatatactcataatttttgtgggacatcaatcatcacaatatc |
41249964 |
T |
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| Q |
201 |
acatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcataaaattcatctcaaataatac |
300 |
Q |
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| T |
41249965 |
acatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcataaaattcatct---------c |
41250055 |
T |
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| Q |
301 |
aaaacatttgatcatgtctttccaatgtctttaatttcttctcttcagaactaactaactaactaacggatatt |
374 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41250056 |
aaaacatttgatcatgtctttcc-atgtctttaatttcttctcttcagaactaactaactaactaacggatatt |
41250128 |
T |
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