View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_high_21 (Length: 251)

Name: NF20902_high_21
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_high_21
NF20902_high_21
[»] chr1 (45 HSPs)
chr1 (18-251)||(48823885-48824110)
chr1 (18-77)||(46333946-46334005)
chr1 (17-77)||(28928778-28928838)
chr1 (24-77)||(49444990-49445043)
chr1 (26-77)||(34062217-34062268)
chr1 (20-74)||(29371370-29371424)
chr1 (24-77)||(4609075-4609128)
chr1 (20-77)||(9157389-9157446)
chr1 (20-77)||(15220813-15220870)
chr1 (24-77)||(38674511-38674564)
chr1 (24-77)||(46334025-46334078)
chr1 (18-74)||(34062291-34062347)
chr1 (23-73)||(37155129-37155180)
chr1 (26-77)||(38674582-38674633)
chr1 (24-74)||(8337933-8337983)
chr1 (20-77)||(1819491-1819548)
chr1 (18-54)||(48993908-48993944)
chr1 (18-54)||(49444904-49444940)
chr1 (18-77)||(741502-741561)
chr1 (18-65)||(4579263-4579309)
chr1 (18-65)||(48498506-48498552)
chr1 (23-77)||(2573160-2573214)
chr1 (18-72)||(4579169-4579222)
chr1 (31-65)||(36290428-36290462)
chr1 (30-75)||(19711192-19711237)
chr1 (24-77)||(32157604-32157657)
chr1 (23-67)||(5694895-5694939)
chr1 (18-54)||(15220922-15220958)
chr1 (18-54)||(29179588-29179624)
chr1 (30-74)||(47303477-47303521)
chr1 (19-74)||(8337853-8337907)
chr1 (20-63)||(28928864-28928907)
chr1 (18-53)||(44183438-44183473)
chr1 (18-73)||(48604947-48605002)
chr1 (24-54)||(29179708-29179738)
chr1 (16-54)||(32540859-32540897)
chr1 (24-54)||(36290518-36290548)
chr1 (24-54)||(46931994-46932024)
chr1 (24-54)||(48994028-48994058)
chr1 (18-51)||(26514245-26514278)
chr1 (18-71)||(28739418-28739471)
chr1 (44-77)||(37155072-37155105)
chr1 (18-54)||(5995480-5995516)
chr1 (26-54)||(44706895-44706923)
chr1 (24-52)||(48498412-48498440)
[»] chr4 (33 HSPs)
chr4 (18-77)||(50384105-50384164)
chr4 (18-77)||(31430461-31430520)
chr4 (18-77)||(47404585-47404644)
chr4 (18-77)||(24006070-24006129)
chr4 (18-77)||(40789258-40789317)
chr4 (20-74)||(28693925-28693979)
chr4 (23-77)||(55090001-55090055)
chr4 (23-77)||(55090075-55090129)
chr4 (20-65)||(24006153-24006198)
chr4 (24-77)||(42375016-42375069)
chr4 (24-77)||(47404664-47404717)
chr4 (24-76)||(53954616-53954668)
chr4 (23-74)||(52028554-52028605)
chr4 (18-76)||(55089877-55089935)
chr4 (24-65)||(31430549-31430590)
chr4 (32-77)||(52028628-52028673)
chr4 (18-54)||(42375121-42375157)
chr4 (31-74)||(40789192-40789235)
chr4 (18-72)||(9712846-9712900)
chr4 (18-77)||(6271781-6271849)
chr4 (20-64)||(19184551-19184595)
chr4 (18-54)||(47661953-47661989)
chr4 (18-54)||(51265556-51265592)
chr4 (19-77)||(26186093-26186160)
chr4 (26-65)||(38714831-38714870)
chr4 (24-54)||(51265442-51265472)
chr4 (18-55)||(44379921-44379958)
chr4 (18-54)||(23444260-23444296)
chr4 (26-54)||(23444380-23444408)
chr4 (41-77)||(26186039-26186075)
chr4 (22-54)||(30710011-30710043)
chr4 (18-54)||(35682157-35682193)
chr4 (18-54)||(53954721-53954757)
[»] chr8 (20 HSPs)
chr8 (18-77)||(34541803-34541862)
chr8 (16-77)||(34229720-34229781)
chr8 (18-77)||(6296605-6296664)
chr8 (18-77)||(8243388-8243447)
chr8 (18-54)||(5033272-5033308)
chr8 (18-54)||(33841582-33841618)
chr8 (18-71)||(1880323-1880375)
chr8 (18-54)||(5667088-5667124)
chr8 (18-54)||(35440960-35440996)
chr8 (25-73)||(37618735-37618782)
chr8 (18-73)||(39139844-39139899)
chr8 (35-74)||(39850972-39851011)
chr8 (24-54)||(5033158-5033188)
chr8 (18-68)||(6894018-6894068)
chr8 (24-54)||(8243499-8243529)
chr8 (24-54)||(33841702-33841732)
chr8 (24-54)||(35441080-35441110)
chr8 (20-52)||(34229634-34229666)
chr8 (29-77)||(36766175-36766223)
chr8 (23-59)||(38619555-38619591)
[»] chr6 (12 HSPs)
chr6 (18-77)||(31654305-31654364)
chr6 (20-77)||(10521851-10521908)
chr6 (20-77)||(24618680-24618737)
chr6 (24-77)||(12343106-12343159)
chr6 (18-74)||(551165-551221)
chr6 (29-77)||(10521928-10521976)
chr6 (18-54)||(24618592-24618628)
chr6 (18-77)||(2315383-2315442)
chr6 (26-61)||(13766746-13766781)
chr6 (18-52)||(24587452-24587486)
chr6 (44-77)||(12343179-12343212)
chr6 (44-77)||(13043536-13043569)
[»] chr3 (26 HSPs)
chr3 (18-77)||(33689255-33689314)
chr3 (18-74)||(49414505-49414561)
chr3 (24-74)||(1801577-1801627)
chr3 (12-65)||(49418685-49418738)
chr3 (18-77)||(43139709-43139768)
chr3 (20-74)||(47677337-47677391)
chr3 (20-77)||(1272495-1272552)
chr3 (20-77)||(30476476-30476533)
chr3 (18-54)||(1272560-1272596)
chr3 (23-75)||(18321732-18321784)
chr3 (18-54)||(45103100-45103136)
chr3 (31-65)||(39385779-39385813)
chr3 (23-77)||(47677260-47677314)
chr3 (20-77)||(55223311-55223368)
chr3 (18-54)||(1801437-1801473)
chr3 (18-54)||(30734513-30734549)
chr3 (18-77)||(30476553-30476612)
chr3 (36-74)||(1801528-1801566)
chr3 (31-77)||(29031727-29031773)
chr3 (20-74)||(29031796-29031850)
chr3 (24-54)||(41752961-41752991)
chr3 (18-71)||(11512387-11512440)
chr3 (44-77)||(47492073-47492106)
chr3 (18-54)||(41753075-41753111)
chr3 (26-54)||(43139820-43139848)
chr3 (26-54)||(47492158-47492186)
[»] chr2 (25 HSPs)
chr2 (18-77)||(2893963-2894022)
chr2 (24-77)||(15011359-15011412)
chr2 (18-77)||(2828584-2828643)
chr2 (18-77)||(14229432-14229490)
chr2 (24-74)||(6217306-6217356)
chr2 (24-74)||(29925652-29925702)
chr2 (20-73)||(14464557-14464610)
chr2 (24-77)||(38933593-38933646)
chr2 (37-77)||(2828663-2828703)
chr2 (18-54)||(38933698-38933734)
chr2 (26-77)||(2894042-2894093)
chr2 (18-72)||(42971576-42971629)
chr2 (18-54)||(16514535-16514571)
chr2 (30-77)||(2143951-2143998)
chr2 (26-77)||(37762009-37762060)
chr2 (18-52)||(6722064-6722098)
chr2 (18-72)||(7755336-7755390)
chr2 (24-54)||(9172987-9173017)
chr2 (20-54)||(14470585-14470619)
chr2 (24-54)||(16514421-16514451)
chr2 (25-54)||(6217222-6217251)
chr2 (44-77)||(6721977-6722010)
chr2 (24-65)||(37961712-37961753)
chr2 (18-54)||(14892371-14892407)
chr2 (18-54)||(29508681-29508717)
[»] chr7 (24 HSPs)
chr7 (18-77)||(41018228-41018287)
chr7 (20-77)||(27028795-27028852)
chr7 (18-77)||(34854695-34854754)
chr7 (24-74)||(29053396-29053446)
chr7 (26-77)||(42628303-42628354)
chr7 (18-65)||(45231854-45231901)
chr7 (18-54)||(11016980-11017016)
chr7 (18-54)||(42628406-42628442)
chr7 (26-65)||(4649328-4649367)
chr7 (26-65)||(29053322-29053361)
chr7 (18-54)||(4290656-4290692)
chr7 (21-77)||(4649401-4649457)
chr7 (18-72)||(10419542-10419596)
chr7 (24-54)||(11016866-11016896)
chr7 (20-70)||(25001349-25001399)
chr7 (24-74)||(30165329-30165379)
chr7 (24-54)||(34854806-34854836)
chr7 (24-54)||(38975802-38975832)
chr7 (24-54)||(41018339-41018369)
chr7 (24-54)||(45231961-45231991)
chr7 (18-71)||(7211860-7211913)
chr7 (18-71)||(17272699-17272752)
chr7 (17-72)||(46282867-46282922)
chr7 (18-54)||(48000848-48000884)
[»] chr5 (24 HSPs)
chr5 (18-73)||(28818917-28818972)
chr5 (24-77)||(3899845-3899898)
chr5 (24-77)||(16971150-16971203)
chr5 (21-77)||(38134452-38134508)
chr5 (18-65)||(26662399-26662446)
chr5 (18-65)||(26933994-26934041)
chr5 (24-65)||(2953204-2953245)
chr5 (18-54)||(2953301-2953337)
chr5 (18-74)||(3180060-3180116)
chr5 (18-54)||(16971255-16971291)
chr5 (30-77)||(16439217-16439264)
chr5 (17-54)||(3899950-3899987)
chr5 (18-54)||(291208-291244)
chr5 (18-54)||(2093928-2093964)
chr5 (18-77)||(6912297-6912356)
chr5 (18-65)||(16802444-16802491)
chr5 (18-61)||(19598426-19598469)
chr5 (19-54)||(29699478-29699513)
chr5 (24-54)||(19655155-19655185)
chr5 (20-77)||(16802523-16802580)
chr5 (44-77)||(29699446-29699479)
chr5 (18-54)||(2356382-2356418)
chr5 (18-54)||(30117819-30117855)
chr5 (26-54)||(39777050-39777078)
[»] scaffold0047 (2 HSPs)
scaffold0047 (24-74)||(63763-63813)
scaffold0047 (28-77)||(63836-63885)
[»] scaffold0016 (2 HSPs)
scaffold0016 (24-77)||(49782-49835)
scaffold0016 (18-53)||(49694-49729)
[»] scaffold0481 (1 HSPs)
scaffold0481 (23-74)||(2892-2943)
[»] scaffold1033 (1 HSPs)
scaffold1033 (20-77)||(2292-2349)
[»] scaffold1029 (1 HSPs)
scaffold1029 (20-77)||(2292-2349)
[»] scaffold0586 (1 HSPs)
scaffold0586 (44-77)||(7126-7159)
[»] scaffold0161 (1 HSPs)
scaffold0161 (24-52)||(27217-27245)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 48823885 - 48824110
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctttggcgacatagagttggggaaacactatgttactaagaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||        |||||||||||||    
T  48823885 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgggtgacatagagttgggg--------tgttactaagaaa 48823976  T
Q  118 actaatactaaaaaagtccaaactgaaccaattaaagacatacacgagtaacatcaattttataaggtattaattacttgttttatcaattatcacttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48823977 actaatactaaaaaagtccaaactgaaccaattaaagacatacacgagtaacatcaattttataaggtattaattacttgttttatcaattatcacttca 48824076  T
Q  218 aaatgaggatatcatacagtgccatgtagcataa 251  Q
    ||||||||||||||||||||||||||||||||||    
T  48824077 aaatgaggatatcatacagtgccatgtagcataa 48824110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 46333946 - 46334005
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  46333946 ggtagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgctt 46334005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 28928778 - 28928838
Alignment:
Q  17 tggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  28928778 tggtagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgctt 28928838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 49445043 - 49444990
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  49445043 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 49444990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 34062217 - 34062268
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34062217 ttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 34062268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 29371370 - 29371424
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29371370 tagcatttgggtgacatagagttaggtgacattggccaatcacaatgtcacaatg 29371424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 4609128 - 4609075
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  4609128 acttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgctt 4609075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 9157446 - 9157389
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  9157446 tagcacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgctt 9157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 15220813 - 15220870
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||    
T  15220813 tagcacttgggtgacatggagttgggtgacattggtcaatcacgatctcacaatgctt 15220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 38674511 - 38674564
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  38674511 acttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgctt 38674564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 46334078 - 46334025
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  46334078 acttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgctt 46334025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 34062347 - 34062291
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  34062347 ggtagcatttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatg 34062291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 37155180 - 37155129
Alignment:
Q  23 cacttgggtgaca-tagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37155180 cacttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaat 37155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 38674633 - 38674582
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  38674633 ttgggtgacatagagttgggtgatattggccaatcataatgtcacaatgctt 38674582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 8337983 - 8337933
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  8337983 acttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatg 8337933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 1819491 - 1819548
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||  |||||||||||||||||||||||  |||||||||| |||||||||||    
T  1819491 tagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgctt 1819548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 48993908 - 48993944
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  48993908 ggtagcacttgggtgacatagagttgggtgacattgg 48993944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 49444904 - 49444940
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  49444904 ggtagcacttgggtgacatagagttgggtgacattgg 49444940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 741502 - 741561
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||| |||| ||||| || |||||||||| ||||||||||| |||||||||||    
T  741502 ggtagcacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgctt 741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 4579309 - 4579263
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||    
T  4579309 ggtagcacttgggtgacatagaatt-ggtgacattggccaatcacaat 4579263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 48498552 - 48498506
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  48498552 ggtagcacttgggtgacatagagtt-ggtgacattgaccaatcacaat 48498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 2573160 - 2573214
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||| |||||||||||| |||| |||| | |||||||||||||||||||||    
T  2573160 cacttgggggacatagagttgagtgatattgactaatcacaatatcacaatgctt 2573214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 4579169 - 4579222
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 72  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||| ||||||    
T  4579169 ggtagcacttgggtgacatagaatt-ggtgacattggccaaccacaatgtcacaa 4579222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 36290428 - 36290462
Alignment:
Q  31 tgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||||||||||||||||||||||||||||    
T  36290428 tgacatagagttgggtgacattggccaatcacaat 36290462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 19711192 - 19711237
Alignment:
Q  30 gtgacatagagttgggtgacattggccaatcacaatatcacaatgc 75  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||    
T  19711192 gtgacatagagttgggtgacattgaccaatcacaatgttacaatgc 19711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 32157657 - 32157604
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||| |||||||||||| ||||||||||| |||||||| | |||||||||||    
T  32157657 acttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgctt 32157604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 5694895 - 5694939
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatat 67  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  5694895 cacttgagtgacatagagtttggtgacattggtcaatcacaatat 5694939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15220958 - 15220922
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15220958 ggtagcatttgggtgacatagagttgggtgacattgg 15220922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 29179588 - 29179624
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||| ||||||||||||||||||||||||    
T  29179588 ggtagcacttggatgacatagagttgggtgacattgg 29179624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 47303521 - 47303477
Alignment:
Q  30 gtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatg 47303477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 8337853 - 8337907
Alignment:
Q  19 gtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||| ||||| |||||||||| ||||||||| |||||||||| ||||||||    
T  8337853 gtagcacttaggtgatatagagttgg-tgacattggtcaatcacaatgtcacaatg 8337907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 28928907 - 28928864
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcaca 63  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||    
T  28928907 tagcacttgagtgatatagagtttggtgacattggccaatcaca 28928864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 44183473 - 44183438
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattg 53  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44183473 ggtagcacttgggtgacatagagttaggtgacattg 44183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 48604947 - 48605002
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||| |||| ||| |||||||| ||||||||||| |||||||||| |||||||    
T  48604947 ggtagcatttggatgatatagagttaggtgacattggtcaatcacaatgtcacaat 48605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 29179738 - 29179708
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  29179738 acttgggtgacatagagttgggtgacattgg 29179708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 32540897 - 32540859
Alignment:
Q  16 atggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32540897 atggtagcacttgggtgacatagaattggatgacattgg 32540859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 36290548 - 36290518
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  36290548 acttgggtgacatagagttgggtgacattgg 36290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 46931994 - 46932024
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  46931994 acttgggtgacatagagttgggtgacattgg 46932024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 48994058 - 48994028
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  48994058 acttgggtgacatagagttgggtgacattgg 48994028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 26514278 - 26514245
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacat 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  26514278 ggtagcatttgggtgacatagagttgggtgacat 26514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 28739471 - 28739418
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcaca 71  Q
    ||||||||||||||||||| | | | ||||||||||||||| |||||| |||||    
T  28739471 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 28739418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 37155072 - 37155105
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||| |||||||||||    
T  37155072 ggtgacattggccaatcacaatgtcacaatgctt 37155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 5995516 - 5995480
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||| |||||||||||||||||||||| |||||||||    
T  5995516 ggtaacacttgggtgacatagagttggatgacattgg 5995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 44706923 - 44706895
Alignment:
Q  26 ttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||    
T  44706923 ttgggtgacatagagttgggtgacattgg 44706895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 48498412 - 48498440
Alignment:
Q  24 acttgggtgacatagagttgggtgacatt 52  Q
    |||||||||||||||||||||||||||||    
T  48498412 acttgggtgacatagagttgggtgacatt 48498440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 50384105 - 50384164
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50384105 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgctt 50384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31430461 - 31430520
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  31430461 ggtagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgctt 31430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 47404585 - 47404644
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  47404585 ggtagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgctt 47404644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 24006070 - 24006129
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  24006070 ggtagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgctt 24006129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40789317 - 40789258
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  40789317 ggtagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgctt 40789258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 28693925 - 28693979
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  28693925 tagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatg 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 55090001 - 55090055
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  55090001 cacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgctt 55090055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 55090129 - 55090075
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  55090129 cacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgctt 55090075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 24006198 - 24006153
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  24006198 tagcacttgggtgacatagagttgggtgacattgaccaatcacaat 24006153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 42375016 - 42375069
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgctt 42375069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 47404717 - 47404664
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  47404717 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgctt 47404664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 53954616 - 53954668
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgct 76  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  53954616 acttgggtgatataaagttgggtgacattggccaatcacaatgtcacaatgct 53954668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 52028554 - 52028605
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  52028554 cacttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatg 52028605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 55089877 - 55089935
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgct 76  Q
    ||||||| || ||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  55089877 ggtagcatttaggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 31430590 - 31430549
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  31430590 acttgggtgacatagagttgggtgacattggccaattacaat 31430549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 52028673 - 52028628
Alignment:
Q  32 gacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  52028673 gacatagaattgggtgacattggccaatcacaatgtcacaatgctt 52028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 42375157 - 42375121
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  42375157 ggtagcacttgggtgacatagagttgggtgacattgg 42375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 40789192 - 40789235
Alignment:
Q  31 tgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  40789192 tgacatagagtttggtgacattggccaatcacaatgtcacaatg 40789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 9712846 - 9712900
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 72  Q
    |||||||||||||||||||||  || |||||||||||||||||| ||| ||||||    
T  9712846 ggtagcacttgggtgacatagcatttggtgacattggccaatcagaatgtcacaa 9712900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 6271849 - 6271781
Alignment:
Q  18 ggtagcacttgggtgacatagagttg---------ggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||    
T  6271849 ggtagcacttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgctt 6271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 19184595 - 19184551
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaa 64  Q
    ||||||||||||||| || |||||||||||||||| |||||||||    
T  19184595 tagcacttgggtgacgtaaagttgggtgacattggtcaatcacaa 19184551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 47661989 - 47661953
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47661989 ggtagcatttgggtgacatagagttgggtgacattgg 47661953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 51265592 - 51265556
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||| |||||||||||||||||||    
T  51265592 ggtagcacttgggtgacttagagttgggtgacattgg 51265556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26186160 - 26186093
Alignment:
Q  19 gtagcacttgggtgacatagagttggg---------tgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||| |||||||||||    
T  26186160 gtagcacttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgctt 26186093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 38714831 - 38714870
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  38714831 ttgggtgacatagagttaggtgatattggccaatcacaat 38714870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 51265442 - 51265472
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  51265442 acttgggtgacatagagttgggtgacattgg 51265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 44379921 - 44379958
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggc 55  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  44379921 ggtagcacttggatgacatagagttgagtgacattggc 44379958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 23444260 - 23444296
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  23444260 ggtagcatttgggtaacatagagttgggtgacattgg 23444296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 23444408 - 23444380
Alignment:
Q  26 ttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||    
T  23444408 ttgggtgacatagagttgggtgacattgg 23444380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 26186039 - 26186075
Alignment:
Q  41 ttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||| |||||||||| |||||||||||    
T  26186039 ttgggtgacattggtcaatcacaatgtcacaatgctt 26186075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 30710043 - 30710011
Alignment:
Q  22 gcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||| |||||||||||    
T  30710043 gcacttgggtgacatagagttaggtgacattgg 30710011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 35682157 - 35682193
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  35682157 ggtagcacttgggtgacatagagttaggtgatattgg 35682193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 53954757 - 53954721
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||  |||||||||||||||||||||||||    
T  53954757 ggtagcacttttgtgacatagagttgggtgacattgg 53954721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34541803 - 34541862
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  34541803 ggtagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgctt 34541862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 34229781 - 34229720
Alignment:
Q  16 atggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  34229781 atggtagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgctt 34229720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 6296605 - 6296664
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  6296605 ggtagcacttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgctt 6296664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 8243388 - 8243447
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||  ||||||||||    
T  8243388 ggtagcacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgctt 8243447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 5033308 - 5033272
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  5033308 ggtagcacttgggtgacatagagttgggtgacattgg 5033272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 33841582 - 33841618
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  33841582 ggtagcacttgggtgacatagagttgggtgacattgg 33841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 1880375 - 1880323
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcaca 71  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  1880375 ggtagcacttgggtgacatagaatt-ggtgacattggtcaatcacaatgtcaca 1880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 5667088 - 5667124
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5667088 ggtagcacttgggtgacatagagttggatgacattgg 5667124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 35440960 - 35440996
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||| |||||||||||||||||||    
T  35440960 ggtagcacttgggtgacttagagttgggtgacattgg 35440996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 37618735 - 37618782
Alignment:
Q  25 cttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  37618735 cttgggtgacatagaattgg-tgacattggccaatcacaatgtcacaat 37618782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 39139899 - 39139844
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||| |||||||||||||  || ||||||||||| |||||||||| |||||||    
T  39139899 ggtagcatttgggtgacatagtatttggtgacattggtcaatcacaatgtcacaat 39139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 39850972 - 39851011
Alignment:
Q  35 atagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  39850972 atagagttgggtgacattggccaatcacaatgccacaatg 39851011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 5033158 - 5033188
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  5033158 acttgggtgacatagagttgggtgacattgg 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 6894018 - 6894068
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatc 68  Q
    ||||||||||||||||||||   || ||||||||||| |||||||||||||    
T  6894018 ggtagcacttgggtgacataatatttggtgacattggtcaatcacaatatc 6894068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 8243529 - 8243499
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  8243529 acttgggtgacatagagttgggtgacattgg 8243499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 33841732 - 33841702
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  33841732 acttgggtgacatagagttgggtgacattgg 33841702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 35441110 - 35441080
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  35441110 acttgggtgacatagagttgggtgacattgg 35441080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 34229634 - 34229666
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacatt 52  Q
    ||||||||| |||||||||||||||||||||||    
T  34229634 tagcacttgtgtgacatagagttgggtgacatt 34229666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 36766175 - 36766223
Alignment:
Q  29 ggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||| | |||||||  ||| |||||||    
T  36766175 ggtgacatagagttgggtgacattggtcgatcacaacgtcataatgctt 36766223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 38619591 - 38619555
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaat 59  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  38619591 cacttgggtggcatagagttgggtgatattggccaat 38619555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31654305 - 31654364
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  31654305 ggtagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgctt 31654364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10521851 - 10521908
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  10521851 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgctt 10521908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24618737 - 24618680
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  24618737 tagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgctt 24618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 12343106 - 12343159
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||| | ||||||||||  ||||||||||    
T  12343106 acttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgctt 12343159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 551165 - 551221
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||  |||||||    
T  551165 ggtaacacttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatg 551221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 10521976 - 10521928
Alignment:
Q  29 ggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||| |||||||||| |||||||||| ||| |||||||    
T  10521976 ggtgacatagagttgagtgacattggtcaatcacaatgtcataatgctt 10521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 24618592 - 24618628
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24618592 ggtagcacttgagtgacatagagttgggtgacattgg 24618628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 2315442 - 2315383
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||| ||||||||||||| ||||||||||   |||||||||| || |||||||    
T  2315442 ggtagcacttgtgtgacatagagttaggtgacattgaataatcacaataccataatgctt 2315383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 13766746 - 13766781
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatca 61  Q
    |||||||||||||||||||||||||||| |||||||    
T  13766746 ttgggtgacatagagttgggtgacattgaccaatca 13766781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 24587452 - 24587486
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacatt 52  Q
    |||||||||| ||||||||||||||||||||||||    
T  24587452 ggtagcacttaggtgacatagagttgggtgacatt 24587486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 12343212 - 12343179
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||| |||||||||||    
T  12343212 ggtgacattggccaatcacaatgtcacaatgctt 12343179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 13043569 - 13043536
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||| |||||||||||||||||||||    
T  13043569 ggtgacattggctaatcacaatatcacaatgctt 13043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 33689314 - 33689255
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  33689314 ggtagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgctt 33689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 49414561 - 49414505
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  49414561 ggtagcacttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 1801627 - 1801577
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1801627 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 1801577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 49418685 - 49418738
Alignment:
Q  12 gaatatggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  49418685 gaatgtggtagcacttgggtgacatagagttgggtgatattggtcaatcacaat 49418738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 43139709 - 43139768
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||| ||| |||||||    
T  43139709 ggtagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgctt 43139768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 47677391 - 47677337
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||    
T  47677391 tagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatg 47677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 1272495 - 1272552
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||| |||||||||||||| |||||||||||||||||| | | |||||||||||    
T  1272495 tagcacttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgctt 1272552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 30476476 - 30476533
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||| |||||| |||| | |||||||||||||||||||||| |||||||||||    
T  30476476 tagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgctt 30476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1272596 - 1272560
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  1272596 ggtagcacttgggtgacatagagttgggtgacattgg 1272560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 18321784 - 18321732
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgc 75  Q
    ||||||| |||||||||||||| ||||||||| |||||||||| |||||||||    
T  18321784 cacttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgc 18321732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 45103100 - 45103136
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  45103100 ggtagcacttgggtgacatagagttgggtgacattgg 45103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 39385813 - 39385779
Alignment:
Q  31 tgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||||||||||||||||||||||||||||    
T  39385813 tgacatagagttgggtgacattggccaatcacaat 39385779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 47677260 - 47677314
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||| ||||||||||||| |||||||||| || |||||||| |||||||||||    
T  47677260 cacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgctt 47677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 55223368 - 55223311
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||  |||| ||||| |||||| ||| |||||||||||    
T  55223368 tagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgctt 55223311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 1801437 - 1801473
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1801437 ggtaacacttgggtgacatagagttgggtgacattgg 1801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 30734549 - 30734513
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30734549 ggtagcacttgggtgacatagagttaggtgacattgg 30734513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 30476612 - 30476553
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||| ||||| || ||||||||  |||||||||| |||||||||| |||||||||||    
T  30476612 ggtagcatttgggggatatagagttatgtgacattggtcaatcacaatgtcacaatgctt 30476553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 1801566 - 1801528
Alignment:
Q  36 tagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  1801566 tagagttgggtgacattggccaatcacaatgccacaatg 1801528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 29031727 - 29031773
Alignment:
Q  31 tgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  29031727 tgacatagagttaggtgatattggtcaatcacaatgtcacaatgctt 29031773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 29031850 - 29031796
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||| ||||||||||||| ||||| ||||| |||| ||||| ||||||||    
T  29031850 tagcacttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatg 29031796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 41752961 - 41752991
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  41752961 acttgggtgacatagagttgggtgacattgg 41752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 11512387 - 11512440
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcaca 71  Q
    ||||||||||||||||||| | | | ||||||||||||||| |||||| |||||    
T  11512387 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 11512440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 47492073 - 47492106
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||| |||||||||||    
T  47492073 ggtgacattggccaatcacaatgtcacaatgctt 47492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 41753111 - 41753075
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  41753111 ggtaacacttgggtgacatagagttgagtgacattgg 41753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 43139848 - 43139820
Alignment:
Q  26 ttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||    
T  43139848 ttgggtgacatagagttgggtgacattgg 43139820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 47492186 - 47492158
Alignment:
Q  26 ttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||    
T  47492186 ttgggtgacatagagttgggtgacattgg 47492158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2893963 - 2894022
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2893963 ggtaacacttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgctt 2894022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 15011412 - 15011359
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgctt 15011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2828584 - 2828643
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  2828584 ggtagcacttctgtgacatagagttgggtgacattggccaatcacaatgtcaaaatgctt 2828643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 14229490 - 14229432
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  14229490 ggtagcacttgggtgacatagagttggatgacattgg-caatcacaatgtcacaatgctt 14229432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 6217356 - 6217306
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6217356 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 6217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 29925702 - 29925652
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  29925702 acttgggtaacatagagttgggtgacattggccaatcacaatgccacaatg 29925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 14464557 - 14464610
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||| |||||||    
T  14464557 tagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaat 14464610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 38933593 - 38933646
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  38933593 acttaggtgacatagagttgggtgacattgaccaatcacaatgccacaatgctt 38933646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2828703 - 2828663
Alignment:
Q  37 agagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 38933734 - 38933698
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  38933734 ggtagcacttgggtgacatagagttgggtgacattgg 38933698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 2894093 - 2894042
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  2894093 ttgggtgacatagagttggatgacattggtcaatcacagtgtcacaatgctt 2894042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 42971629 - 42971576
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 72  Q
    |||||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  42971629 ggtagcacttgggtgacataaaattgg-tgacattgaccaatcacaatatcacaa 42971576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16514571 - 16514535
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||||||||| |||||    
T  16514571 ggtagcacttgggtgacatagagttgggtgagattgg 16514535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 2143998 - 2143951
Alignment:
Q  30 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2143998 gtgacatagagttgagtgacgttggccaatcacaatgtcataatgctt 2143951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 37762009 - 37762060
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||| |||||||| ||||||||| ||||||||||| || ||||||||    
T  37762009 ttgggtgacgtagagttgagtgacattgaccaatcacaatgtcgcaatgctt 37762060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 6722098 - 6722064
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacatt 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  6722098 ggtagcacttgggtgacatagagttggttgacatt 6722064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 7755336 - 7755390
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 72  Q
    ||||||||||||||||||| | | | ||||||||||||||| |||||| ||||||    
T  7755336 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaa 7755390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 9172987 - 9173017
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  9172987 acttgggtgacatagagttgggtgacattgg 9173017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 14470585 - 14470619
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||| |||||||||||||||||||||||||    
T  14470585 tagcacttgtgtgacatagagttgggtgacattgg 14470619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 16514421 - 16514451
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  16514421 acttgggtgacatagagttgggtgacattgg 16514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 6217222 - 6217251
Alignment:
Q  25 cttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattgg 6217251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6721977 - 6722010
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||| |||||||||||||||||||||||    
T  6721977 ggtgacattgaccaatcacaatatcacaatgctt 6722010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 37961712 - 37961753
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  37961712 acttgggtggcatagagttgggtgacattgaccgatcacaat 37961753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 14892407 - 14892371
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  14892407 ggtagcatttgggtgacatagagttggatgacattgg 14892371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 29508681 - 29508717
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  29508681 ggtaacacttaggtgacatagagttgggtgacattgg 29508717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 41018228 - 41018287
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  41018228 ggtagcacttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgctt 41018287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27028795 - 27028852
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgctt 27028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34854695 - 34854754
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  34854695 ggtaacacttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgctt 34854754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 29053446 - 29053396
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  29053446 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 29053396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 42628303 - 42628354
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  42628303 ttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgctt 42628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 45231854 - 45231901
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  45231854 ggtaacacttgggtgacatagagttgggtgacattgaccaatcacaat 45231901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 11017016 - 11016980
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  11017016 ggtagcacttgggtgacatagagttgggtgacattgg 11016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 42628442 - 42628406
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  42628442 ggtagcacttgggtgacatagagttgggtgacattgg 42628406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 4649328 - 4649367
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4649328 ttgggtgacatagagttgggtgacattggtcaatcacaat 4649367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 29053322 - 29053361
Alignment:
Q  26 ttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29053322 ttgggtgacatagagtttggtgacattggccaatcacaat 29053361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4290692 - 4290656
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4290692 ggtagcacttgggtgacatacagttgggtgacattgg 4290656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4649457 - 4649401
Alignment:
Q  21 agcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||| ||| ||||||||||||| ||||||||||| |||||||||| |||| ||||||    
T  4649457 agcaattgagtgacatagagtttggtgacattggtcaatcacaatgtcacgatgctt 4649401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 10419596 - 10419542
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaa 72  Q
    |||| ||||||||| |||||||||| ||||||||||||  |||||||| ||||||    
T  10419596 ggtaacacttgggtaacatagagtttggtgacattggctgatcacaatgtcacaa 10419542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 11016866 - 11016896
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  11016866 acttgggtgacatagagttgggtgacattgg 11016896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 25001349 - 25001399
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcac 70  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||| ||||    
T  25001349 tagcatttgggtgaaatagagtttggtgacattggacaatcacaatgtcac 25001399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 30165379 - 30165329
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||| |||| |||||||||||||||||||| |||||||||| ||| ||||    
T  30165379 acttgtgtgatatagagttgggtgacattggtcaatcacaatgtcataatg 30165329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 34854836 - 34854806
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  34854836 acttgggtgacatagagttgggtgacattgg 34854806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 38975802 - 38975832
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  38975802 acttgggtgacatagagttgggtgacattgg 38975832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 41018369 - 41018339
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  41018369 acttgggtgacatagagttgggtgacattgg 41018339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 45231991 - 45231961
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattgg 45231961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7211860 - 7211913
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcaca 71  Q
    ||||||||||||||||||| | | | ||||||||||||||| |||||| |||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 7211913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17272699 - 17272752
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcaca 71  Q
    ||||||||||||||||||| | | | ||||||||||||||| |||||| |||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 17272752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 46282867 - 46282922
Alignment:
Q  17 tggtagcacttgggtgacatag-agttgggtgacattggccaatcacaatatcacaa 72  Q
    |||||||||||| ||||||| | |||||| ||||||||||||| |||||||||||||    
T  46282867 tggtagcacttgagtgacattgtagttgg-tgacattggccaaccacaatatcacaa 46282922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 48000884 - 48000848
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  48000884 ggtaacacttgggtcacatagagttgggtgacattgg 48000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 28818917 - 28818972
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaat 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  28818917 ggtagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaat 28818972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 3899845 - 3899898
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3899845 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 3899898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 16971150 - 16971203
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  16971150 acttgggtgacatagacttgggtgacattggccaatcacaatgccacaatgctt 16971203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 38134508 - 38134452
Alignment:
Q  21 agcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  38134508 agcacttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgctt 38134452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26662399 - 26662446
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26662399 ggtagcacttgtgtgacatagagttgggtgacattgaccaatcacaat 26662446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26933994 - 26934041
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26933994 ggtagcacttgtgtgacatagagttgggtgacattgaccaatcacaat 26934041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 2953204 - 2953245
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  2953204 acttgggtgacatagagttgggtgacattggtcaatcacaat 2953245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2953337 - 2953301
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  2953337 ggtagcacttgggtgacatagagttgggtgacattgg 2953301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3180060 - 3180116
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||| ||||||||||||||||||||||||  |||||| ||| ||||||||    
T  3180060 ggtagcacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatg 3180116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16971291 - 16971255
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  16971291 ggtagcacttgggtgacatagagttgggtgacattgg 16971255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 16439264 - 16439217
Alignment:
Q  30 gtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgctt 16439217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 3899987 - 3899950
Alignment:
Q  17 tggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3899987 tggtagcacttgggtgacttagagttgggtgacattgg 3899950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 291244 - 291208
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||| ||||||||||||||||||||    
T  291244 ggtagcacttgggtgatatagagttgggtgacattgg 291208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2093928 - 2093964
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||||||||||||||||||||||| |||||    
T  2093928 ggtagcacttgggtgacatagagttgggtgatattgg 2093964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 6912297 - 6912356
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||  |||||||||||| | ||||||| | |||||||||| |||||||||||    
T  6912297 ggtagcacttgtatgacatagagttagttgacattagtcaatcacaatgtcacaatgctt 6912356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16802444 - 16802491
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatcacaat 65  Q
    |||||||||| ||| ||||| | |||||||||||||||||||||||||    
T  16802444 ggtagcacttaggtaacataaatttgggtgacattggccaatcacaat 16802491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 19598469 - 19598426
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattggccaatca 61  Q
    |||| ||||||||||||||||||||||||||||||  |||||||    
T  19598469 ggtaacacttgggtgacatagagttgggtgacattaaccaatca 19598426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 29699513 - 29699478
Alignment:
Q  19 gtagcacttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||| |||||    
T  29699513 gtagcacttgggtgacatagagttgggtgatattgg 29699478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 19655155 - 19655185
Alignment:
Q  24 acttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||||    
T  19655155 acttgggtgacatagagttgggtgacattgg 19655185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 16802580 - 16802523
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||  |||| ||||||||| ||||||||| ||||||| ||| |||||||||||    
T  16802580 tagcacttaagtgatatagagttgagtgacattgaccaatcagaatgtcacaatgctt 16802523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 29699479 - 29699446
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||| |||||||||||    
T  29699479 ggtgacattggccaatcacaatgtcacaatgctt 29699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2356418 - 2356382
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  2356418 ggtagcacttgtgtgacatagagttggatgacattgg 2356382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 30117819 - 30117855
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattgg 54  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  30117819 ggtagcatttgggtgatatagagttgggtgacattgg 30117855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 39777050 - 39777078
Alignment:
Q  26 ttgggtgacatagagttgggtgacattgg 54  Q
    |||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattgg 39777078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 63763 - 63813
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  63763 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatg 63813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 63885 - 63836
Alignment:
Q  28 gggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  63885 gggtgatatagagttgggtgacattggccaatcacaatgtcacaatgctt 63836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 49835 - 49782
Alignment:
Q  24 acttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  49835 acttcggtgacatagagttaggtgacattggccaatcacaatgccacaatgctt 49782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 49694 - 49729
Alignment:
Q  18 ggtagcacttgggtgacatagagttgggtgacattg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  49694 ggtagcacttgggtgacatagagttgggtgacattg 49729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 2892 - 2943
Alignment:
Q  23 cacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatg 74  Q
    |||| ||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  2892 cactggggtgacatagagttgggtgatattgaccaatcacaatgtcacaatg 2943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2349 - 2292
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||| |||||||||| ||||| |||||||  |||||||||| |||||||||||    
T  2349 tagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgctt 2292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2349 - 2292
Alignment:
Q  20 tagcacttgggtgacatagagttgggtgacattggccaatcacaatatcacaatgctt 77  Q
    ||||||||| |||||||||| ||||| |||||||  |||||||||| |||||||||||    
T  2349 tagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgctt 2292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 7159 - 7126
Alignment:
Q  44 ggtgacattggccaatcacaatatcacaatgctt 77  Q
    |||||||||||||||||||||| |||||||||||    
T  7159 ggtgacattggccaatcacaatgtcacaatgctt 7126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 27217 - 27245
Alignment:
Q  24 acttgggtgacatagagttgggtgacatt 52  Q
    |||||||||||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacatt 27245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University