View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_high_24 (Length: 243)

Name: NF20902_high_24
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_high_24
NF20902_high_24
[»] chr7 (2 HSPs)
chr7 (13-243)||(26072740-26072969)
chr7 (13-243)||(26096527-26096756)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 26072969 - 26072740
Alignment:
Q  13 atatacaaaggtgcactaaagagggatagtctactcaagatgatcgttttgaacggtcaatcaagtgatcaccgtctttctttgataatttaaaattttt 112  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26072969 atatacaaaggttcactaaagagggataatctactcaagatgatcattttgaacggtcaatcaagtgatcaccgtctttctttgataatttaaaattttt 26072870  T
Q  113 gcattcagatacaccagtttcacaatccaagttatcatgtctaaccggaaagagtaatagtgggtgtcaaagtaattaatctactaatattccatgcagt 212  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||    
T  26072869 gcattcagatgcaccagtttcacaatccaagttatcatgtccaaccggaaagagtaagagtgggtgtctaagtaattagtctactaatattccatccagt 26072770  T
Q  213 tctaacacaactttccaaaaatgaattagtc 243  Q
    || |||||||||| |||||||||||||||||    
T  26072769 tc-aacacaacttcccaaaaatgaattagtc 26072740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 26096756 - 26096527
Alignment:
Q  13 atatacaaaggtgcactaaagagggatagtctactcaagatgatcgttttgaacggtcaatcaagtgatcaccgtctttctttgataatttaaaattttt 112  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26096756 atatacaaaggttcactaaagagggataatctactcaagatgatcattttgaacggtcaatcaagtgatcaccgtctttctttgataatttaaaattttt 26096657  T
Q  113 gcattcagatacaccagtttcacaatccaagttatcatgtctaaccggaaagagtaatagtgggtgtcaaagtaattaatctactaatattccatgcagt 212  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||    
T  26096656 gcattcagatgcaccagtttcacaatccaagttatcatgtccaaccggaaagagtaagagtgggtgtctaagtaattagtctactaatattccatccagt 26096557  T
Q  213 tctaacacaactttccaaaaatgaattagtc 243  Q
    || |||||||||| |||||||||||||||||    
T  26096556 tc-aacacaacttcccaaaaatgaattagtc 26096527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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