View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_high_8 (Length: 425)
Name: NF20902_high_8
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 14027888 - 14028137
Alignment:
| Q |
16 |
ggggaaaaacgtagaagacttta-gagtctttcataaaaaa-----caaaagaaatataatcaaccataattaataatcatatgattcgtcgatttttcc |
109 |
Q |
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| T |
14027888 |
ggggaaaaacgtagaagactttaagagtctttcataaaaaacaaaacaaaagaaatataatcaaccataattaataattatatgattcgtcgatttttcc |
14027987 |
T |
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| Q |
110 |
ttggtaatctttttcttttgattaatgttatacgatatacattattttgatttttaacattgcaaaataaaatttaaatgccataaaatgggtaccccta |
209 |
Q |
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| T |
14027988 |
tttgtaatctttttcttttgatttatgttatacgatatacagtattttgatttttaacaaggcaaaataaaatttaaatgccataaaaacggtaccccta |
14028087 |
T |
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| Q |
210 |
gctcaagtagtacaagggttgaacaagagtcttacaaaaataacacgaac |
259 |
Q |
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| T |
14028088 |
gctcaaatagtacaagggttgaacaagagtcttacaaaaataacacgaac |
14028137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14113308 - 14113345
Alignment:
| Q |
23 |
aacgtagaagactttagagtctttcataaaaaacaaaa |
60 |
Q |
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| T |
14113308 |
aacgtagaagactttagagtctttcataaaaaacaaaa |
14113345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 14113547 - 14113604
Alignment:
| Q |
331 |
tatgaaaatcaaaagttaaacaaagatacttaactttcaaccaccaaaaccataataa |
388 |
Q |
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| T |
14113547 |
tatgaaaatcaaaagtaacacaaagatacttacctttcaaccaccggaacaataataa |
14113604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14107148 - 14107185
Alignment:
| Q |
23 |
aacgtagaagactttagagtctttcataaaaaacaaaa |
60 |
Q |
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| T |
14107148 |
aacgttgaagactttatagtctttcataaaaaacaaaa |
14107185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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