View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_high_9 (Length: 419)

Name: NF20902_high_9
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_high_9
NF20902_high_9
[»] chr6 (3 HSPs)
chr6 (259-413)||(92308-92462)
chr6 (262-332)||(10895582-10895652)
chr6 (258-310)||(30797691-30797743)
[»] chr4 (5 HSPs)
chr4 (259-397)||(55403334-55403474)
chr4 (158-259)||(54745741-54745842)
chr4 (158-259)||(54762468-54762569)
chr4 (158-259)||(54769922-54770023)
chr4 (256-332)||(22460462-22460538)
[»] chr7 (3 HSPs)
chr7 (259-378)||(37125553-37125672)
chr7 (290-363)||(17264880-17264953)
chr7 (259-307)||(11033487-11033535)
[»] chr2 (4 HSPs)
chr2 (259-400)||(43326101-43326242)
chr2 (259-333)||(4009254-4009328)
chr2 (256-365)||(36620159-36620268)
chr2 (259-328)||(29522579-29522648)
[»] chr1 (4 HSPs)
chr1 (260-376)||(12307880-12307996)
chr1 (259-334)||(5733161-5733236)
chr1 (259-363)||(51285246-51285350)
chr1 (259-333)||(19659733-19659806)
[»] scaffold0026 (1 HSPs)
scaffold0026 (252-365)||(91551-91664)
[»] scaffold1342 (1 HSPs)
scaffold1342 (259-333)||(1227-1301)
[»] chr5 (2 HSPs)
chr5 (259-329)||(3805677-3805747)
chr5 (259-310)||(22775942-22775993)
[»] chr8 (2 HSPs)
chr8 (263-365)||(30253394-30253496)
chr8 (258-303)||(21468244-21468289)
[»] chr3 (1 HSPs)
chr3 (261-307)||(18478411-18478457)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 259 - 413
Target Start/End: Original strand, 92308 - 92462
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  359 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92408 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 92462  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 10895652 - 10895582
Alignment:
Q  262 tggcggagccacatggggacaggg-tatggccatggcctacccattaattctgtgaaattactataataccc 332  Q
    ||||||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||  ||||||||||||    
T  10895652 tggcggagccacatgaggactggggtatg-ccatggcctacccatttattctgtgaaaagactataataccc 10895582  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 30797691 - 30797743
Alignment:
Q  258 acagtggcggagccacatggggacagggtatggccatggcctacccattaatt 310  Q
    |||| |||||||| || |||||||||||  ||||||||| |||||||||||||    
T  30797691 acaggggcggagcgacttggggacaggggctggccatggtctacccattaatt 30797743  T

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Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 397
Target Start/End: Original strand, 55403334 - 55403474
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 358  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  359 tgccattgacccactctctccc--actcccactctctcatt 397  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  55403434 tgccattgacccactctctcccagactcccgctctctcatt 55403474  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 54745842 - 54745741
Alignment:
Q  158 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54745842 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54745743  T
Q  258 ac 259  Q
    ||    
T  54745742 ac 54745741  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 54762569 - 54762468
Alignment:
Q  158 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54762569 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54762470  T
Q  258 ac 259  Q
    ||    
T  54762469 ac 54762468  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 54770023 - 54769922
Alignment:
Q  158 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54770023 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54769924  T
Q  258 ac 259  Q
    ||    
T  54769923 ac 54769922  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 22460538 - 22460462
Alignment:
Q  256 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccc 332  Q
    ||||||||||||||||||||| |||| |||  |||||||  |||||||||| ||| |||||||  ||||||||||||    
T  22460538 agacagtggcggagccacatgtggactgggattggccataacctacccatttattttgtgaaaagactataataccc 22460462  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 37125553 - 37125672
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 358  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  37125553 cagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacca 37125652  T
Q  359 tgccattgacccactctctc 378  Q
    |||||||||| |||||||||    
T  37125653 tgccattgactcactctctc 37125672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 17264953 - 17264880
Alignment:
Q  290 gccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcca 363  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||  |  |||||||||| |||| | |||||||    
T  17264953 gccatggcctacccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgcca 17264880  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccatta 307  Q
    ||||||||||||||| || |||||||| ||||||||||||  |||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 259 - 400
Target Start/End: Original strand, 43326101 - 43326242
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 358  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 43326200  T
Q  359 tgccattgacccactctctcccactcccactctctcattcgt 400  Q
    || ||| |||||||| || |  ||||||||||||||||||||    
T  43326201 tgtcatcgacccactatcccaaactcccactctctcattcgt 43326242  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 4009254 - 4009328
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 333  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 4009328  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 36620268 - 36620159
Alignment:
Q  256 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaa 355  Q
    |||||||||||||||||| || |||| ||||||||| ||| ||| |||||||||| ||||||||||| |||||||||| ||  |||||| ||| |||||     
T  36620268 agacagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaatattacag 36620169  T
Q  356 ccatgccatt 365  Q
    | ||||||||    
T  36620168 ctatgccatt 36620159  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 29522648 - 29522579
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataat 328  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatactataat 29522579  T

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Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 12307996 - 12307880
Alignment:
Q  260 agtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccat 359  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacctttggtataattttaattttacaaccat 12307897  T
Q  360 gccattgacccactctc 376  Q
     ||||||||||||||||    
T  12307896 accattgacccactctc 12307880  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 5733161 - 5733236
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctc 334  Q
    ||||||||||||||| ||||||| ||| |||||||| |||||||||||| || || |||||||| || ||||||||    
T  5733161 cagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaattacaattataccctc 5733236  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 51285246 - 51285350
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 358  Q
    ||||||||||||||| ||||||||||| | ||||||||||  ||||||| || || |||||||| | |||||||| ||  |||| | || | ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  359 tgcca 363  Q
    |||||    
T  51285346 tgcca 51285350  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 19659806 - 19659733
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 333  Q
    |||||||||||||||||| ||||  || ||||||||||||| ||||||| || || ||||||||||| |||||||    
T  19659806 cagtggcggagccacatgaggaccagg-atggccatggcctccccattatttttgggaaattactattataccct 19659733  T

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Target: scaffold0026 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 91551 - 91664
Alignment:
Q  252 ttagagacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaatttt 351  Q
    ||||| ||||||| |||||||| || ||||||||||||||||||||||||||| || |||||||||||||  ||||||||||    ||||||||||| ||    
T  91551 ttagaaacagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttgtcataattttaatatt 91650  T
Q  352 acaaccatgccatt 365  Q
    |||||||| |||||    
T  91651 acaaccattccatt 91664  T

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Target: scaffold1342 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 1227 - 1301
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 333  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 1301  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 3805747 - 3805677
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataata 329  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  3805747 cagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 22775942 - 22775993
Alignment:
Q  259 cagtggcggagccacatggggacagggtatggccatggcctacccattaatt 310  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccattaatt 22775993  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 30253496 - 30253394
Alignment:
Q  263 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcc 362  Q
    ||||||||||||||||    ||| ||||| |||||||| |||||| || || ||||||||||| |||||||| || | |||| ||  |||||| ||||||    
T  30253496 ggcggagccacatgggatttggggatggcaatggcctatccattatttttgggaaattactattataccctctatgttatttgaaaattacaaacatgcc 30253397  T
Q  363 att 365  Q
    |||    
T  30253396 att 30253394  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 21468244 - 21468289
Alignment:
Q  258 acagtggcggagccacatggggacagggtatggccatggcctaccc 303  Q
    |||||||||||| ||| || ||||| ||||||||||||||||||||    
T  21468244 acagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 18478457 - 18478411
Alignment:
Q  261 gtggcggagccacatggggacagggtatggccatggcctacccatta 307  Q
    |||| |||||||||||||||| ||| ||||||| |||||||||||||    
T  18478457 gtggtggagccacatggggactggggatggccaaggcctacccatta 18478411  T

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