View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_11 (Length: 372)
Name: NF20902_low_11
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 3641708 - 3642060
Alignment:
| Q |
14 |
agggcagttgctgaattcagcagactctgaatgaattttaagagactaaccatatagtgtttacagagagaaaggatcgtatcaaaag---------tta |
104 |
Q |
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| T |
3641708 |
agggcagttgctgaattcagcagactctgaatgaattttaagagactaaccatataatgtttacagagagaaaggatcgtatcaaaaggttcaaaagtta |
3641807 |
T |
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| Q |
105 |
taaatgaagtcaaaatttggccaacgtgttgttgcaagaatcaaattcacgatgtcaccggatcaaacttcat---atattttcactgatgttacctggt |
201 |
Q |
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| T |
3641808 |
taaatgaagtcaaaatttggccaacatgttgttacaagaatcaaattcacgatgtcaccggatcaaacttcatcatatattttcactgatgttacctggt |
3641907 |
T |
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| Q |
202 |
ggctagaaggaatctatacaaatatcattaaatcacatagataaagtaaattataggcatttttcagcatagagatattcacatttggatttgtgatgta |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641908 |
ggctagaaggaatctatacaaataacattaaatcacatagataaagtaaattataggcatttttcagcatagagatattcacatttggatttgtgatgta |
3642007 |
T |
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| Q |
302 |
agttatgtccatttgcaattagattctcttacaacaacatattaacacatgat |
354 |
Q |
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| T |
3642008 |
agttatgtccatttgcaattagattctcttacaacaacatattaacacatgat |
3642060 |
T |
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