View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_low_12 (Length: 354)

Name: NF20902_low_12
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_low_12
NF20902_low_12
[»] chr6 (6 HSPs)
chr6 (19-347)||(32665541-32665867)
chr6 (113-219)||(34538172-34538278)
chr6 (133-232)||(2205565-2205663)
chr6 (107-193)||(2460099-2460185)
chr6 (137-215)||(34939758-34939836)
chr6 (106-222)||(33911229-33911345)
[»] scaffold0020 (1 HSPs)
scaffold0020 (145-222)||(159959-160036)
[»] chr5 (7 HSPs)
chr5 (118-220)||(2468440-2468543)
chr5 (136-215)||(36542259-36542338)
chr5 (178-232)||(36774726-36774780)
chr5 (106-235)||(17259211-17259340)
chr5 (175-223)||(2880563-2880611)
chr5 (142-222)||(7674655-7674735)
chr5 (239-279)||(35135773-35135813)
[»] chr4 (8 HSPs)
chr4 (156-223)||(6978959-6979026)
chr4 (169-223)||(11158367-11158421)
chr4 (107-193)||(27123300-27123386)
chr4 (156-210)||(29467621-29467675)
chr4 (239-304)||(9843777-9843842)
chr4 (169-230)||(19429706-19429769)
chr4 (142-223)||(24370934-24371017)
chr4 (175-223)||(29263376-29263424)
[»] chr3 (10 HSPs)
chr3 (144-222)||(30923883-30923961)
chr3 (142-223)||(40122736-40122817)
chr3 (155-207)||(1360522-1360574)
chr3 (106-193)||(24603699-24603786)
chr3 (142-212)||(27290884-27290954)
chr3 (137-223)||(36646360-36646446)
chr3 (136-222)||(41452530-41452616)
chr3 (137-222)||(24887262-24887346)
chr3 (109-222)||(37273141-37273254)
chr3 (143-223)||(9279310-9279390)
[»] chr2 (6 HSPs)
chr2 (137-223)||(16785326-16785412)
chr2 (106-223)||(11513904-11514019)
chr2 (169-216)||(3973548-3973595)
chr2 (143-222)||(32821816-32821895)
chr2 (147-222)||(43141878-43141953)
chr2 (142-222)||(12215814-12215894)
[»] scaffold0003 (1 HSPs)
scaffold0003 (142-223)||(306332-306413)
[»] chr1 (4 HSPs)
chr1 (142-223)||(3924630-3924711)
chr1 (129-193)||(4549266-4549330)
chr1 (112-220)||(6279408-6279516)
chr1 (142-193)||(17628635-17628686)
[»] chr8 (12 HSPs)
chr8 (106-222)||(11415161-11415277)
chr8 (137-216)||(10062119-10062198)
chr8 (156-235)||(14949860-14949939)
chr8 (156-235)||(20672744-20672823)
chr8 (156-220)||(11188152-11188216)
chr8 (89-220)||(30191073-30191202)
chr8 (137-220)||(9540974-9541057)
chr8 (175-222)||(30277261-30277308)
chr8 (156-235)||(33553234-33553313)
chr8 (136-222)||(6509280-6509366)
chr8 (157-215)||(42370359-42370417)
chr8 (239-279)||(14482121-14482161)
[»] chr7 (4 HSPs)
chr7 (156-215)||(40428569-40428628)
chr7 (142-220)||(12234872-12234950)
chr7 (138-192)||(29290370-29290424)
chr7 (239-279)||(27389302-27389342)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 32665867 - 32665541
Alignment:
Q  19 aactggacctagtaagatggctcaactaagaatttgtaaatttgatcaaccaatagtatgtttcatttgtttatttgagtttacctatactagcataagc 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  32665867 aactggacctagtaagatggttcaactaagaatttgtaaatttgatcaaccaatagtatgtttcatttgtttatttgagtttaccta--ctagcataagc 32665770  T
Q  119 actagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32665769 actagtgagtctgctttagagatcttatggaaacattttatgacatgcctatagcctgttttcagcatatttccacaaactctttaggatagcttataaa 32665670  T
Q  219 aacaatttgactttattggaatagaaatagtttatacataaactcttatatgttaagcactcatataagctttttatccaaacagggccaaagtcccacc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32665669 aacaatttgactttattggaatagaaatagtttatacataaactcttatatgttaagcactcatataagctttttatccaaacagggcctaagtcccacc 32665570  T
Q  319 tggtctgcttatcattatcagtattatct 347  Q
    ||||||||||||||||||||||| |||||    
T  32665569 tggtctgcttatcattatcagtagtatct 32665541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 34538172 - 34538278
Alignment:
Q  113 ataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagct 212  Q
    ||||||||| ||||| ||  || |||||||||||  |||||  ||| |||||| | |||| || |||||||| |||||  ||||||||| ||||||||||    
T  34538172 ataagcacttgtgagactatttgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctctaggatagct 34538271  T
Q  213 tataaaa 219  Q
    |||||||    
T  34538272 tataaaa 34538278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 2205565 - 2205663
Alignment:
Q  133 tttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaatttgacttt 232  Q
    |||||||| |||||||||||| || | ||||||  ||||| || | |||||| |||||||| || ||||  | |||||||||| ||||||||||||||||    
T  2205565 tttagagagcttatggaaacaatt-aggacatgtttataaactatattcagcttatttccataagctctccaagatagcttatgaaaacaatttgacttt 2205663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 2460099 - 2460185
Alignment:
Q  107 actagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttcca 193  Q
    ||||||||||| ||| ||||| ||| || ||||| ||||||||||||  |||||||||| || |||  |||||||| | ||||||||    
T  2460099 actagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttcca 2460185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 34939836 - 34939758
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttat 215  Q
    |||| |||| |||||||  |||||||||| | ||||  |||||||||| |||||||| |||||||  ||||||||||||    
T  34939836 gagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 33911229 - 33911345
Alignment:
Q  106 tactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttag 205  Q
    |||||||| ||||||| ||||  ||| || |||||||||||| ||| |  ||  |||||| || | | ||||||||||| ||||| |||||||| || ||    
T  33911229 tactagcacaagcactcgtgaaactgtttaagagatcttatgaaaatagctttggacatgtctgttagctgttttcagcttattttcacaaacttttcag 33911328  T
Q  206 gatagcttataaaaaca 222  Q
    ||||| |||| ||||||    
T  33911329 gatagtttatgaaaaca 33911345  T

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Target: scaffold0020 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 159959 - 160036
Alignment:
Q  145 atggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    ||||||||| ||||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  159959 atggaaacagtttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaaca 160036  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 2468543 - 2468440
Alignment:
Q  118 cactagtgagtctgctttagagatcttatggaaaca-ttttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttata 216  Q
    |||||||||| ||| ||| |||| |||||||||||| |||||||||||| | |||| ||||||| ||| || ||||| |||||||| |||||||||||||    
T  2468543 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 2468444  T
Q  217 aaaa 220  Q
    ||||    
T  2468443 aaaa 2468440  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 36542259 - 36542338
Alignment:
Q  136 agagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttat 215  Q
    |||||| |||||||||||| |||||||||| | | || ||||||| | | ||||||||||| |||| |||||||||||||    
T  36542259 agagattttatggaaacatcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttat 36542338  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 36774726 - 36774780
Alignment:
Q  178 tttcagcatatttccacaaactctttaggatagcttataaaaacaatttgacttt 232  Q
    ||||||| |||||||| || ||||  ||||||||||||||||||| |||||||||    
T  36774726 tttcagcttatttccataagctctccaggatagcttataaaaacagtttgacttt 36774780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 17259340 - 17259211
Alignment:
Q  106 tactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttag 205  Q
    ||||| |||||||||| ||||| ||  || || || ||| ||||||||  || ||||||| | || | ||||| | ||| |||||||| ||||||| ||     
T  17259340 tactaacataagcacttgtgagacttgttgagtgagcttttggaaacaacttttgacatgaccatgagctgttctaagcttatttccataaactctctaa 17259241  T
Q  206 gatagcttataaaaacaatttgactttatt 235  Q
    |||||||| | | |||||||||||||||||    
T  17259240 gatagctttttagaacaatttgactttatt 17259211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 2880563 - 2880611
Alignment:
Q  175 tgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||||||| |||||||| ||||||||  | |||||||||||||||||    
T  2880563 tgttttcagcttatttccataaactcttctgaatagcttataaaaacaa 2880611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 7674735 - 7674655
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    ||||||||||||  ||||||||||  |||||  |||||||||| ||||| |||||| |||  | |||||||||| ||||||    
T  7674735 cttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 35135773 - 35135813
Alignment:
Q  239 atagaaatagtttatacataaactcttatatgttaagcact 279  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  35135773 atagaaatatcttatacataaacacttatatgttaagcact 35135813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 6978959 - 6979026
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||||||| |||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||    
T  6978959 ttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaa 6979026  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 11158367 - 11158421
Alignment:
Q  169 ataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||| ||||||||||| ||||||||||| |||| || |||||||||| |||||||    
T  11158367 ataaactgttttcagcttatttccacaagctctctaagatagcttatgaaaacaa 11158421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 27123300 - 27123386
Alignment:
Q  107 actagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttcca 193  Q
    ||||||||||| ||| ||||| ||| || ||||| ||||||||||||  |||||||||| || |||  |||||||| | ||||||||    
T  27123300 actagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttcca 27123386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 29467621 - 29467675
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatag 210  Q
    |||||||||| | |||| ||||||||||| |||||||| ||||||| ||||||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 9843777 - 9843842
Alignment:
Q  239 atagaaatagtttatacataaactcttatatgttaagcactcatataagctttttatccaaacagg 304  Q
    |||||||||| |||||||||| |  ||||||| |||||||| || |||| | ||||||||||||||    
T  9843777 atagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaacagg 9843842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 19429769 - 19429706
Alignment:
Q  169 ataacctgttttcagcatatttccacaaactctttaggatagcttata--aaaacaatttgact 230  Q
    |||| ||||||||||| |||||||| || ||||  |||||||||||||  ||||||||||||||    
T  19429769 ataagctgttttcagcttatttccataagctctccaggatagcttatatcaaaacaatttgact 19429706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 24370934 - 24371017
Alignment:
Q  142 cttatggaaacattttatgacatgccta--taacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    ||||||||||||  ||||||||||  ||  ||| | ||||||||| |||||| | ||||| ||||||||||||||| |||||||    
T  24370934 cttatggaaacaacttatgacatgtatacataagccgttttcagcttatttctataaactatttaggatagcttatgaaaacaa 24371017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 29263424 - 29263376
Alignment:
Q  175 tgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||||||| ||||||||||| ||||  |||||||||||| |||||||    
T  29263424 tgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaa 29263376  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 30923883 - 30923961
Alignment:
Q  144 tatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    ||||||||||  |||||||||| |||||| ||||||||||| |||||| | ||||||| |||||||| |||| ||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaaca 30923961  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 40122736 - 40122817
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||| ||| | ||||||||||  ||||||  |||||| ||| ||||||||  |||| |||||||||||||||||||||||    
T  40122736 cttatgaaaatagtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaa 40122817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 1360522 - 1360574
Alignment:
Q  155 tttatgacatgcctataacctgttttcagcatatttccacaaactctttagga 207  Q
    ||||||||||| | |||| || |||||||| ||||||||||||||||||||||    
T  1360522 tttatgacatgtccataagctattttcagcttatttccacaaactctttagga 1360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 24603699 - 24603786
Alignment:
Q  106 tactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttcca 193  Q
    |||||||||||||||   |||| ||| ||  |||| ||||| |||||| ||||||||||||| |||| |||||||||  |||||||||    
T  24603699 tactagcataagcacctctgagactgtttgggagaacttattgaaacagtttatgacatgcccataagctgttttcaagatatttcca 24603786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 27290884 - 27290954
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagct 212  Q
    |||||| |||||  |||||||||||| |||| ||||||||||| ||||||||  ||||||  |||||||||    
T  27290884 cttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatagct 27290954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 36646360 - 36646446
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||| |||||||||||   ||||| |||| | |||| ||||||||| | |||||| | ||||||| ||||||||||||| |||||||    
T  36646360 gagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaacaa 36646446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 41452616 - 41452530
Alignment:
Q  136 agagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    ||||| ||||| ||||||  |||||| ||| |||||| ||||||||| | |||||||||||  |||  |||||||||||| ||||||    
T  41452616 agagaccttatagaaacaacttatgatatgtctataagctgttttcaccttatttccacaacttctccaggatagcttatgaaaaca 41452530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 24887262 - 24887346
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    |||||| |||||||||| ||||||||||| | || | ||||||||||| |||| ||| || ||||  |||||||||||| ||||||    
T  24887262 gagatcgtatggaaacaatttatgacatgtc-attaactgttttcagcttattcccataagctctccaggatagcttatgaaaaca 24887346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 37273254 - 37273141
Alignment:
Q  109 tagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggat 208  Q
    ||||||||||||| ||||| ||| ||  |||| ||||||||||||  |||||||||| | ||||  |||||||| | |||||||| ||  |||  | |||    
T  37273254 tagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagat 37273155  T
Q  209 agcttataaaaaca 222  Q
    ||||||| ||||||    
T  37273154 agcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 9279310 - 9279390
Alignment:
Q  143 ttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||||||||  |||| |||||  ||||| ||||||||||| |||||||  |||||||| | ||||| |||| |||||||    
T  9279310 ttatggaaacagcttataacatgtatataagctgttttcagcttatttccttaaactcttcatgatagtttatgaaaacaa 9279390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 16785326 - 16785412
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    ||||||||||||||||| ||||||| | | |||||| ||||||||||  ||| |||| |||||||| |||||| ||||| |||||||    
T  16785326 gagatcttatggaaacagtttatgagaagtctataagctgttttcagattatctccataaactcttcaggatatcttatgaaaacaa 16785412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 11514019 - 11513904
Alignment:
Q  106 tactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttag 205  Q
    |||||||||||||||| ||||| ||| |||||||| |||||| |||||    ||| ||||||||||| || |||||||| |||||||| ||  |||  |     
T  11514019 tactagcataagcacttgtgagactgttttagagagcttatgaaaaca--gcatggcatgcctataagctattttcagcttatttccaaaagttctccat 11513922  T
Q  206 gatagcttataaaaacaa 223  Q
    |||||||||| |||||||    
T  11513921 gatagcttatgaaaacaa 11513904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 3973595 - 3973548
Alignment:
Q  169 ataacctgttttcagcatatttccacaaactctttaggatagcttata 216  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||    
T  3973595 ataacctgttttcagcttatttccataaactccctaggatagcttata 3973548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 32821895 - 32821816
Alignment:
Q  143 ttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    |||| ||||||  |||||||||| | |||| ||||||||||  |||||| | || |||||||||||||||||| ||||||    
T  32821895 ttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaaca 32821816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 43141953 - 43141878
Alignment:
Q  147 ggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    |||||||  |||||||||||| ||||  ||||||||   |||||||| |||||||| |||||||||||| ||||||    
T  43141953 ggaaacaacttatgacatgcccataagttgttttcattttatttccataaactcttcaggatagcttatgaaaaca 43141878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 12215894 - 12215814
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    |||||||||| |  |||||||||| | |||| ||||||||| |||||| ||| || ||||  ||||| |||||||||||||    
T  12215894 cttatggaaatagcttatgacatgtccataagctgttttcaccatattcccataagctctcaaggatggcttataaaaaca 12215814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 306413 - 306332
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    ||||||||||||  |||||||||||| |||| ||||||||||| || || || || |||| ||||||||||||| |||||||    
T  306413 cttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaa 306332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 3924711 - 3924630
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaa 223  Q
    |||||| ||||| ||||||| |||  |||||  ||||||| || |||||||| |||||||| ||||||||||||||||||||    
T  3924711 cttatgaaaacaatttatgaaatgtttataagttgttttcggcttatttccataaactcttcaggatagcttataaaaacaa 3924630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 4549330 - 4549266
Alignment:
Q  129 ctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttcca 193  Q
    |||||| ||||| ||| |||||||| ||||||||||| ||||||  |||||||||| ||||||||    
T  4549330 ctgcttaagagaacttttggaaacaatttatgacatgtctataagttgttttcagcttatttcca 4549266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 6279516 - 6279408
Alignment:
Q  112 cataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagc 211  Q
    |||||||||| ||| | ||| || ||||| |||||||||||| || |  ||||| | ||||  |||||||||| |||||||| || |||| |||||||||    
T  6279516 cataagcacttgtgtggctgtttgagagagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctctctaggatagc 6279417  T
Q  212 ttataaaaa 220  Q
    |||| ||||    
T  6279416 ttatgaaaa 6279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 17628686 - 17628635
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttcca 193  Q
    ||||||||||||  |||||||||| | |||| ||||||||||||||||||||    
T  17628686 cttatggaaacaacttatgacatgtccataagctgttttcagcatatttcca 17628635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 11415277 - 11415161
Alignment:
Q  106 tactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttag 205  Q
    ||||| |||||| ||| |||||  || ||||||||  |||||||||||  |||| ||||| | |||| || || ||||| ||||| |||||||||| |||    
T  11415277 tactaacataagtacttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctag 11415178  T
Q  206 gatagcttataaaaaca 222  Q
    |||||||||| ||||||    
T  11415177 gatagcttatgaaaaca 11415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 10062119 - 10062198
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttata 216  Q
    |||| ||||||| |||||||||||||||  |||||| ||||||||||| ||||| || ||||||   |||||||||||||    
T  10062119 gagagcttatggcaacattttatgacatttctataagctgttttcagcttatttgcataaactcacaaggatagcttata 10062198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 14949939 - 14949860
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaatttgactttatt 235  Q
    |||||||||| | |||| ||||||||||| |||||| | || |||||||||||||||||| |||| | ||||||| ||||    
T  14949939 ttatgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttatgaaaagagtttgactctatt 14949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 20672823 - 20672744
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaatttgactttatt 235  Q
    ||||||||||   |||| ||||||||||| ||||| || || ||||  ||||||||||||||||||| ||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacagtttgactttatt 20672744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 11188152 - 11188216
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaa 220  Q
    |||||||||| ||||||| |||||||||  |||| ||| ||||||| ||||||||||||| ||||    
T  11188152 ttatgacatgtctataacttgttttcagtttattaccataaactctctaggatagcttatcaaaa 11188216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 30191073 - 30191202
Alignment:
Q  89 ttatttgagtttacctatactagcataagcactagtgagtctgctttagagatcttatggaaacattttatgacatgcctataacctgttttcagcatat 188  Q
    ||||||||||||| ||||  | ||||||||||| || || ||| ||  |||| ||||||||||||  ||||||||||   | ||| |||||||||| |||    
T  30191073 ttatttgagtttatctat--tggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttat 30191170  T
Q  189 ttccacaaactctttaggatagcttataaaaa 220  Q
    ||||| ||||  || |||||||||||| ||||    
T  30191171 ttccataaacatttcaggatagcttatcaaaa 30191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 9540974 - 9541057
Alignment:
Q  137 gagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaa 220  Q
    |||| ||||||||||||| |||||||||| | ||||  ||| |||||| ||||| || || |||| ||||||||||||| ||||    
T  9540974 gagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagcttatgaaaa 9541057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 30277261 - 30277308
Alignment:
Q  175 tgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    |||||||||| |||||||| ||||||| ||||||||||||| ||||||    
T  30277261 tgttttcagcttatttccataaactctctaggatagcttatgaaaaca 30277308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 33553313 - 33553234
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaacaatttgactttatt 235  Q
    |||||||||| |  ||| |||||  |||| |||||||| || ||||| | |||||||||| |||||||||||||||||||    
T  33553313 ttatgacatgtccctaagctgttcccagcttatttccataagctcttcaagatagcttatgaaaacaatttgactttatt 33553234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 6509280 - 6509366
Alignment:
Q  136 agagatcttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaaca 222  Q
    ||||| ||||| ||||||  ||||||||||||||||| || |||||| | |||||| | || ||||  |||||||||||| ||||||    
T  6509280 agagagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaaca 6509366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 42370359 - 42370417
Alignment:
Q  157 tatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttat 215  Q
    ||||||||| ||| || ||||||||||| |||||||| |||||||| | ||||||||||    
T  42370359 tatgacatgtctacaaactgttttcagcttatttccataaactcttcatgatagcttat 42370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 14482161 - 14482121
Alignment:
Q  239 atagaaatagtttatacataaactcttatatgttaagcact 279  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  14482161 atagaaatagtttatacataagcacttatatgataagcact 14482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 40428628 - 40428569
Alignment:
Q  156 ttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttat 215  Q
    |||||||| ||| |||| ||||||||||| |||||||| || ||||||||||||||||||    
T  40428628 ttatgacacgccgataaactgttttcagcttatttccataagctctttaggatagcttat 40428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 12234872 - 12234950
Alignment:
Q  142 cttatggaaacattttatgacatgcctataacctgttttcagcatatttccacaaactctttaggatagcttataaaaa 220  Q
    ||||| ||||||  |||||||||| |||||| ||||||||||| |||||||| || |||| ||||| |||| |||||||    
T  12234872 cttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagctcataaaaa 12234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 29290424 - 29290370
Alignment:
Q  138 agatcttatggaaacattttatgacatgcctataacctgttttcagcatatttcc 192  Q
    ||||||||||||||||  |||||||||| | |||| ||||||||| |||||||||    
T  29290424 agatcttatggaaacaacttatgacatgtccataagctgttttcaacatatttcc 29290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 27389342 - 27389302
Alignment:
Q  239 atagaaatagtttatacataaactcttatatgttaagcact 279  Q
    |||||||||| |||||||||||| |||||||| ||||||||    
T  27389342 atagaaatagcttatacataaacacttatatgataagcact 27389302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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