View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_low_13 (Length: 304)

Name: NF20902_low_13
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_low_13
NF20902_low_13
[»] chr3 (1 HSPs)
chr3 (1-292)||(41249765-41250056)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 41249765 - 41250056
Alignment:
Q  1 cggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatataaaaaaccagttgaataatgtatatttcatgctatgcaaaacatcataggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41249765 cggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatatataaaaccagttgaataatgtatatttcatgctatgcaaaacatcagaggat 41249864  T
Q  101 cactacattacaaatcacccctgtatcgattcatctttaaactcatcaaaatttgaaaatgtactcataatttttgtgggacatcaatcatcacaatatc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41249865 cactacattacaaatcccccctgtatcgattcatctttaaactcatcaaaatttgaaaatatactcataatttttgtgggacatcaatcatcacaatatc 41249964  T
Q  201 acatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcataaaattcatctca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41249965 acatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcataaaattcatctca 41250056  T

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