View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_14 (Length: 302)
Name: NF20902_low_14
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 35671813 - 35671540
Alignment:
| Q |
21 |
atcaggatgattttcaagcctatggtttaaagaaatggtggttctcacctttgtgccacatatcttccatttgattccatatatggaatgatgttctagt |
120 |
Q |
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| T |
35671813 |
atcaggatgattatcaagcctatggtttaaagaaatggtggttctcacctttgtgccacatatcttccatttgattccatatatggaatgatgttctagt |
35671714 |
T |
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| Q |
121 |
tgaggatatgcaaaaggactcttaagtttatataacctgcaaaattttaaatgttgaattcagttaagttaaaattttaaggaatcattcaaaatcttaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35671713 |
tgaggatatgcaaaaggactcttaagtttatataacctgcaaaattttaaatgttgaattcagttaagttaaaattttaaggaatcattcaaaatcttaa |
35671614 |
T |
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| Q |
221 |
gagtttctccattttttatagattgacaata--tctaatctaataaataaagttactactacgtactacctatg |
292 |
Q |
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||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
35671613 |
gagtttctccattttgtatagattgacaatatctctaatttaataaataaagttactactacgtactacctatg |
35671540 |
T |
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