View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20902_low_15 (Length: 300)
Name: NF20902_low_15
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_15 |
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| [»] chr4 (10 HSPs) |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 3749926 - 3749641
Alignment:
| Q |
15 |
aagatcgatggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3749926 |
aagatcgatggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccat |
3749827 |
T |
|
| Q |
115 |
caagattcatcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3749826 |
caagattcatcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggt |
3749727 |
T |
|
| Q |
215 |
tactcttgatctctctgtacttgaatacccaacaataataccacttaaacttaaaaatccaaatctgaaaaatcttgtccaaaatc |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3749726 |
tattcttgatctctctgtacttgaatacccaacaataataccacttaaactcaaaaatccaaatctgaaaaatcttgtccaaaatc |
3749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 5894444 - 5894652
Alignment:
| Q |
22 |
atggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagatt |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| | ||||||| ||||| | |||||||| || ||| |||||||||||| ||||||||| |||| |
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| T |
5894444 |
atggtggatttaacgattcaagcagtcttttcaatctcctacatctcaaaaaactgaacttggcttataacaatttcaattctctaattccatcaggatt |
5894543 |
T |
|
| Q |
122 |
catcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactctt |
221 |
Q |
| |
|
|| ||| ||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||| |
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| T |
5894544 |
cagcaaattggagaagttgacttatctgaatttgtcaaaggctagctttgtggggcagattccaattgagatttcacaacttacaaggttggttactctt |
5894643 |
T |
|
| Q |
222 |
gatctctct |
230 |
Q |
| |
|
||||||||| |
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|
| T |
5894644 |
gatctctct |
5894652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 5559976 - 5559768
Alignment:
| Q |
22 |
atggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagatt |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | ||||| ||||| ||| | || ||||| | ||| ||||||||||| |||||||||| |||| |
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|
| T |
5559976 |
atggtggatttaacgattcaagcagtcttttcagtttgcaacacctccagaaactgaatttggctgataactatttcaattcttccattccatcaggatt |
5559877 |
T |
|
| Q |
122 |
catcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactctt |
221 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||||| | |||||||| ||||| | |||||||||||||||| |
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| T |
5559876 |
caacaagttggagaagttgacatatctgaatttgtcatatgctagctttgtggggcaaattcctgtagagatttctcagctcaaaaggttggttactctt |
5559777 |
T |
|
| Q |
222 |
gatctctct |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
5559776 |
gatctctct |
5559768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 5582568 - 5582768
Alignment:
| Q |
23 |
tggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattc |
122 |
Q |
| |
|
|||||||||| | || |||| |||||||| |||||||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||| ||||| |
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| T |
5582568 |
tggtggatttgataatgcaagcagtctttttagtcttcaacatcttcaaaaattgaacttggctgctaacaatttcaattctgtcattccatcaggattc |
5582667 |
T |
|
| Q |
123 |
atcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttg |
222 |
Q |
| |
|
| |||||||| | ||||| ||| ||||||||||| | |||| |||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5582668 |
aacaagttggtgatgttgagttatttgaatttgtcatatgctaactttgtggggcaaattcctatagagatttctcagcttacaaggttggttactcttg |
5582767 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
5582768 |
a |
5582768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 5570372 - 5570565
Alignment:
| Q |
37 |
attcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattcatcaagttggataa |
136 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| |||||||| |||||||| | ||| ||||||||||| ||||||||| |||| | ||| |||| | |
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|
| T |
5570372 |
attcaagtagtctttttagtctccatcatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgat |
5570471 |
T |
|
| Q |
137 |
gttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttgatctctct |
230 |
Q |
| |
|
||||| ||||||||||| ||| | |||| |||||| ||||| ||| | || |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5570472 |
gttgaattatctgaatttatcatatgctaactttgtggggcatatttctatagagatttctcagcttacaaggttggttactcttgatctctct |
5570565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 5885552 - 5885759
Alignment:
| Q |
23 |
tggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattc |
122 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||| | ||| | |||||||| | || |||| |||||| |||||||||| ||| |
|
|
| T |
5885552 |
tggtggatttgacgaatcaagtagtcttttcagtctcttgcatctcaagaaactgaacttggctgataattatttaaattcttccattccatcagctttc |
5885651 |
T |
|
| Q |
123 |
atcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttg |
222 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||| | ||| | ||| ||| ||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
5885652 |
aacaagttggagaagttgacttatctgaatttgtcagatgctggatttcagggggagattccaattgagatttcccatcttacaaggttggttactcttg |
5885751 |
T |
|
| Q |
223 |
atctctct |
230 |
Q |
| |
|
|| ||||| |
|
|
| T |
5885752 |
atatctct |
5885759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 5538501 - 5538708
Alignment:
| Q |
23 |
tggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattc |
122 |
Q |
| |
|
|||||||||| | || ||||||||||||| ||||||||| |||| || ||||| |||||||| ||| |||||| |||| |||||| || ||||| |
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|
| T |
5538501 |
tggtggatttgataatacaagtagtctttttagtcttcaaaatcttcagaaattgaacttggctgctaacaatttcagttctgctattccaccaggattc |
5538600 |
T |
|
| Q |
123 |
atcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttg |
222 |
Q |
| |
|
| |||||||| | ||||| ||||||||||||||| | |||| |||||| ||||||||||| | |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
5538601 |
aacaagttggtgatgttgagttatctgaatttgtcatatgctaactttgtggggcagattcctttagagatttctcagcttacaaggttggtaactctag |
5538700 |
T |
|
| Q |
223 |
atctctct |
230 |
Q |
| |
|
|| ||||| |
|
|
| T |
5538701 |
atatctct |
5538708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 5859031 - 5858823
Alignment:
| Q |
22 |
atggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagatt |
121 |
Q |
| |
|
||||||||||| | || |||| ||||| || |||| ||||||||||||||| | |||||||| | ||| ||||||||||| |||||||||| ||| |
|
|
| T |
5859031 |
atggtggatttgaaaatacaagcagtctatttggtctccaacatctccaaaaagtgaacttggcttttaacaatttcaattcttccattccatcagcatt |
5858932 |
T |
|
| Q |
122 |
catcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactctt |
221 |
Q |
| |
|
|| |||| |||| |||||||||||||||||| | || | ||||| ||| ||| ||||||| || || ||||| ||||||| |||||||||||||||| |
|
|
| T |
5858931 |
caacaagctggagaagttgacatatctgaatcttacagatgctagatttcacgggaagattccaatagaaatttcccagcttataaggttggttactctt |
5858832 |
T |
|
| Q |
222 |
gatctctct |
230 |
Q |
| |
|
||| ||||| |
|
|
| T |
5858831 |
gatatctct |
5858823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 5614041 - 5613850
Alignment:
| Q |
39 |
tcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattcatcaagttggataagt |
138 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| | ||| | |||||||| | || |||| |||||| |||||||||| ||||| |||||||| |||| |
|
|
| T |
5614041 |
tcaagtagtcttttcaatctcctacatctcaagaaactgaacttggctaataattatttaaattcttccattccatcagcattcaacaagttggtgaagt |
5613942 |
T |
|
| Q |
139 |
tgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttgatctctct |
230 |
Q |
| |
|
| || ||||| |||||||| | | ||||| ||||||||||| || |||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
5613941 |
taacttatcttgatttgtcatataatgaatttgtggggcagattccaatagagatttcccagctcacgaggttggttactcttgatctctct |
5613850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 251823 - 251860
Alignment:
| Q |
37 |
attcaagtagtcttttcagtcttcaacatctccaaaaa |
74 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
251823 |
attcaagtagtcttttctgtctccaacatctccaaaaa |
251860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 1486215 - 1486006
Alignment:
| Q |
23 |
tggtggatttaacgattcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||| | | | | ||||| || | ||| |||||||||| ||| |||||| ||||| |
|
|
| T |
1486215 |
tggtggatttaacaattcaagtagtctttttagtctccaacatctcgagagactcaacttagctgaaaacagattcaattctctcatcccatcaggattc |
1486116 |
T |
|
| Q |
123 |
atcaagttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactcttg |
222 |
Q |
| |
|
| ||| |||| | ||||| ||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| || ||||||| ||||||||||||| |
|
|
| T |
1486115 |
aacaaattggtgatgttgaattatttgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactcttg |
1486016 |
T |
|
| Q |
223 |
atctctctgt |
232 |
Q |
| |
|
|| ||||||| |
|
|
| T |
1486015 |
atttctctgt |
1486006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 1400 - 1189
Alignment:
| Q |
23 |
tggtggatttaacgattcaagtagtcttttc-agtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagatt |
121 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||| | | | | ||||| || | ||| |||||||||| ||| |||||| |||| |
|
|
| T |
1400 |
tggtggatttaacaattcaagtagtcttttttagtctccaacatctcgagagactcaacttagctgaaaacagattcaattctctcatcccatcaggatt |
1301 |
T |
|
| Q |
122 |
catcaagttggataagttgacat-atctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttactct |
220 |
Q |
| |
|
|| ||| |||| | ||||| | || ||||||||||||| ||||||||||||||| ||||||| || |||||||| || ||||||| ||||||||||| |
|
|
| T |
1300 |
caacaaattggtgatgttgaatttatttgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactct |
1201 |
T |
|
| Q |
221 |
tgatctctctgt |
232 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
1200 |
tgatttctctgt |
1189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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