View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_19 (Length: 277)
Name: NF20902_low_19
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 36278805 - 36279055
Alignment:
| Q |
9 |
aaaaagaagaaataaagaagaagtgatttggttaaagactagtaccagagtgaagaaagatctcatatcaccaccatgaatctgaactttaggtttagtg |
108 |
Q |
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| T |
36278805 |
aaaaagaagaaataaagaagaagtgatttggttaaagactagtaccagagtgaagaaagatctcatatcaccaccatgaatctgaactttaggtttagtg |
36278904 |
T |
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| Q |
109 |
gtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacagacattttcatagttgaagtgaaataatcaactacatctc |
208 |
Q |
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| T |
36278905 |
gtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacagacattttcatagttgaagtgaaataatcaactacatctc |
36279004 |
T |
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| Q |
209 |
caatcactcttccaatagcaagaggatctgttacaatactcatggtggcta |
259 |
Q |
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| T |
36279005 |
caatcactcttccaatagcaagaggatctgttacaatactcatggtggcta |
36279055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 42325447 - 42325556
Alignment:
| Q |
70 |
ctcatatcaccaccatgaatctgaactttaggtttagtggtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacag |
169 |
Q |
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| T |
42325447 |
ctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacag |
42325546 |
T |
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| Q |
170 |
acattttcat |
179 |
Q |
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| T |
42325547 |
tcattttcat |
42325556 |
T |
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