View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_20 (Length: 270)
Name: NF20902_low_20
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 18029549 - 18029788
Alignment:
| Q |
15 |
catatatattcgcaaagtttctaatcatttaatgggaatgaatttcagggattgaaccaaatgatgaattttacagcatagaaaacatctcagaggctat |
114 |
Q |
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| T |
18029549 |
catatatattcgcaaagtttctaatcatttgatgggaatgaatttcagggattgaaccaaatgatgaattttacagcatagaaaacatctcagaggctat |
18029648 |
T |
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| Q |
115 |
aaaagagggtacaggatttaccccaggaatagaatgtaatagagattcagcacgtaacagtcaactttatcaagtttacatgtgtgtggacacttctggg |
214 |
Q |
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| T |
18029649 |
aaaagagggtacaggatttaccccaggaatagaatgtaatagagattcagcacgtaacagccaactttatcaagtttacatgtgtgtggacacttctggg |
18029748 |
T |
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| Q |
215 |
tcaaatttcattgagtgtcctttgcttccaaggagtagat |
254 |
Q |
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| T |
18029749 |
tcaaatttcattgagtgtcctttgcttccaaggagtagat |
18029788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 18035585 - 18035788
Alignment:
| Q |
28 |
aaagtttctaatcatttaatgggaatgaatttcagggattgaaccaaatgatgaattttacagcatagaaaacatctcagaggctataaaagagggtaca |
127 |
Q |
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| T |
18035585 |
aaagtttctaatcatttaattgcattgaatttcaggtattgaaccagataacaaattttacaacacaggtaatattttagatgctatacaacaggctaca |
18035684 |
T |
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| Q |
128 |
ggatttaccccaggaatagaatgtaatagagattcagcacgtaacagtcaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattg |
227 |
Q |
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| T |
18035685 |
gggtattcaccaggaatagagtgtaatagagattcagcacgaaacagccagctttatcaagtttacatgtgtgcggacatttctgggtcaaaattcattg |
18035784 |
T |
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| Q |
228 |
agtg |
231 |
Q |
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| T |
18035785 |
agtg |
18035788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 18048016 - 18048111
Alignment:
| Q |
136 |
cccaggaatagaatgtaatagagattcagcacgtaacagtcaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtg |
231 |
Q |
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| T |
18048016 |
cccaggaatagtatgtaatagagatccaggacttaaaagtcagcttttaaaagtttacatgtgtgtggatacttctgggtcaaatttcattgagtg |
18048111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 18052842 - 18053022
Alignment:
| Q |
51 |
aatgaatttcagggattgaaccaaatgatgaattttacagcatagaaaacatctcagaggctataaaagagggtacaggatttaccccaggaatagaatg |
150 |
Q |
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| T |
18052842 |
aatgaatttcaggatttgaaccaaatgatcaattttacgacataggaaaccctttaagcattatagaagacgctacagggtttctcccaggaatggaatg |
18052941 |
T |
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| Q |
151 |
taatagagattcagcacgtaacagtcaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtg |
231 |
Q |
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| T |
18052942 |
taatagagattcagcaggtaacgatcaggttttaaaagtttacatgtgcgtggatatttctgggtcaaatttcattcagtg |
18053022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 18000104 - 18000169
Alignment:
| Q |
170 |
aacagtcaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtgtcct |
235 |
Q |
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| T |
18000104 |
aacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcattgactgtcct |
18000169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 18007132 - 18007190
Alignment:
| Q |
170 |
aacagtcaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattga |
228 |
Q |
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| T |
18007132 |
aacagccaactttatcaagtttacttgtgtgtggacacttctggatcagacttcattga |
18007190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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