View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20902_low_31 (Length: 237)
Name: NF20902_low_31
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_31 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10373922 - 10374144
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373922 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
10374021 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374022 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
10374121 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10374122 |
atgtccttgagagaaggtaactg |
10374144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9851731 - 9851509
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851731 |
gtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
9851632 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851631 |
ggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccaggccaattgtctccaacatctccataccacgtatttct |
9851532 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9851531 |
atgtccttgagagaaggtaactg |
9851509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 10033991 - 10033770
Alignment:
| Q |
2 |
taactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10033991 |
taactctatagccttaagtcgaggaaaagcacattttatgccttcaaagggaatccattcattccaattgaccatgttgtcgaactttatacgctcaagg |
10033892 |
T |
|
| Q |
102 |
gatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttcta |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033891 |
gatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacgtatttcta |
10033792 |
T |
|
| Q |
202 |
tgtccttgagagaaggtaactg |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10033791 |
tgtccttgagagaaggtaactg |
10033770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 10128916 - 10128695
Alignment:
| Q |
2 |
taactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagg |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
10128916 |
taactctatagccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgaccatgttgtcgaactttatatgctcaagg |
10128817 |
T |
|
| Q |
102 |
gatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttcta |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128816 |
gatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacgtatttcta |
10128717 |
T |
|
| Q |
202 |
tgtccttgagagaaggtaactg |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10128716 |
tgtccttgagagaaggtaactg |
10128695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9840850 - 9840631
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840850 |
gtaactctatagccttaagttgaggaaaagca---tttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
9840754 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840753 |
ggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
9840654 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
9840653 |
acgtccttgagagaaggtaactg |
9840631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10519477 - 10519255
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10519477 |
gtaactttatagccttaagttgaggaaaagcaaattttatgccttcgaagggaatccattcattccaattgagcatgttgtcgaacattatacgctcaag |
10519378 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10519377 |
ggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacatatttct |
10519278 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
10519277 |
aggtccttgagagaaggtaactg |
10519255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10361878 - 10362100
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
10361878 |
gtaactccatagctctaagttgaggaaaagcacattttatgccttcaaagggaatccattcattccaatttggcatgttgtcgaaatttatgcgctcaag |
10361977 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||| | |||||||||||||| ||||||||||||||||||| | |||||||| ||||| | |
|
|
| T |
10361978 |
ggatggaaatggttggaaggaagaattagaaccatcttcaatctggacataatagaactccaggccaattgtctccaacatgttcataccacatattttt |
10362077 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
| | |||| |||||||||||||| |
|
|
| T |
10362078 |
aggaccttcagagaaggtaactg |
10362100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 10665503 - 10665297
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
10665503 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaatttggtatgttgtcgaattttatacactcaagggatggaaatggttg |
10665404 |
T |
|
| Q |
116 |
gaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaa |
215 |
Q |
| |
|
|||||||||| | || ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | | |||||||| || |||||||||| |
|
|
| T |
10665403 |
gaaggaagaacttgagccttcctcaatctggacataatagaactccgggccaattgtctccaacatctccatgtcgcatatttctaggttcttgagagaa |
10665304 |
T |
|
| Q |
216 |
ggtaact |
222 |
Q |
| |
|
||||||| |
|
|
| T |
10665303 |
ggtaact |
10665297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 10582586 - 10582380
Alignment:
| Q |
17 |
aagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttgg |
116 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||| | || |||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
10582586 |
aagttgaggaaaagcaaattgtatgccttcaaagggaagccatttattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttgg |
10582487 |
T |
|
| Q |
117 |
aaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaag |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
10582486 |
aaggaagaattagaaccttcttcaatctggacataatagaactccaggccaattgtctccaacatctccataccacatatttctaggtccttaagagaag |
10582387 |
T |
|
| Q |
217 |
gtaactg |
223 |
Q |
| |
|
||||||| |
|
|
| T |
10582386 |
gtaactg |
10582380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 10432136 - 10432343
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttg |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
10432136 |
taagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtag |
10432235 |
T |
|
| Q |
116 |
gaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaa |
215 |
Q |
| |
|
|||||||||||| || ||||| ||||||| | || |||||||||| | |||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
10432236 |
gaaggaagaattggagccttcatcaatctggacaaaatagaactctgtgccaattgtctccaacatcttcataccacatatttgtaggtccttgagagaa |
10432335 |
T |
|
| Q |
216 |
ggtaactg |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
10432336 |
ggtaactg |
10432343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10197665 - 10197446
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
10197665 |
gtaactccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaag |
10197566 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|| ||| ||||| |||||||||||| ||| |||||||| || | |||||||||||||||| ||||||||||||||||| | |||||||| ||||| | |
|
|
| T |
10197565 |
ggttggaaatggctggaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatgttcataccacatattttt |
10197466 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaa |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
10197465 |
aggtccttgagagaaggtaa |
10197446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 10090767 - 10090563
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||| || |
|
|
| T |
10090767 |
taagtcgaggaaaagcaaattttatgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctg |
10090668 |
T |
|
| Q |
116 |
gaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaa |
215 |
Q |
| |
|
|||||||||| ||| |||||||| || | |||||||||||||||| ||||||||||||||||| | |||||||| ||||| || ||||||||||||| |
|
|
| T |
10090667 |
gaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatgttcataccacatatttttaggtccttgagagaa |
10090568 |
T |
|
| Q |
216 |
ggtaa |
220 |
Q |
| |
|
||||| |
|
|
| T |
10090567 |
ggtaa |
10090563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 10079387 - 10079184
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttg |
115 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||| ||||| ||||||||| ||||||||| || ||||| |||||||||||||| |||||||| |
|
|
| T |
10079387 |
taagtcgaggaaaaacaaaatttattccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttg |
10079288 |
T |
|
| Q |
116 |
gaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaa |
215 |
Q |
| |
|
|||| |||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
10079287 |
gaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaaatatttctaggtccttgagagaa |
10079188 |
T |
|
| Q |
216 |
ggta |
219 |
Q |
| |
|
|||| |
|
|
| T |
10079187 |
ggta |
10079184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 10186357 - 10186154
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttg |
115 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||| ||||| ||||||||| ||||||||| || ||||| |||||||||||||| |||||||| |
|
|
| T |
10186357 |
taagtcgaggaaaaacaaaatttattccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttg |
10186258 |
T |
|
| Q |
116 |
gaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaa |
215 |
Q |
| |
|
|||| |||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
10186257 |
gaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaaatatttctaggtccttgagagaa |
10186158 |
T |
|
| Q |
216 |
ggta |
219 |
Q |
| |
|
|||| |
|
|
| T |
10186157 |
ggta |
10186154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10262690 - 10262468
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||| || ||||||||||||| |||||| ||||||||||||||| ||| | ||| ||| |||||||||||||| |
|
|
| T |
10262690 |
gtaactccatagctctaagtcgaggaaaagaaagttttatgccttcatagggaagccattcattccaatttggcaagctgttgaattttatacgctcaag |
10262591 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccataccacgtatttc |
199 |
Q |
| |
|
|||| | |||||||||||||||||| ||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
10262590 |
ggattgaaatggttggaaggaagaacaagaaccttcttc-tccttggacataatagaactccggaccaattgtctccaacctcttcataccacatatttc |
10262492 |
T |
|
| Q |
200 |
tatgtccttgagagaaggtaactg |
223 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
10262491 |
taggtccttgagagaaggtaactg |
10262468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 11780076 - 11780277
Alignment:
| Q |
18 |
agtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttgga |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| || |||||| |||| |||||||| |||||||||| |
|
|
| T |
11780076 |
agtcgaggaaatgcaaattttataccttcaaagggaaaccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttgga |
11780175 |
T |
|
| Q |
118 |
aggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaagg |
217 |
Q |
| |
|
|||||||||| || ||| |||| || | |||||||||||| || | |||||| ||||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
11780176 |
aggaagaattggaacctacttctccctggacataatagaacttcgaacaaattgtatccaacatcatcataccacatatttctaactccttgagagaagg |
11780275 |
T |
|
| Q |
218 |
ta |
219 |
Q |
| |
|
|| |
|
|
| T |
11780276 |
ta |
11780277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 11771209 - 11771008
Alignment:
| Q |
18 |
agtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttgga |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||| || |||||| |||| |||||||| |||||||||| |
|
|
| T |
11771209 |
agtcgaggaaaagcaaattttataccttcaaaaggaagccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttgga |
11771110 |
T |
|
| Q |
118 |
aggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaagg |
217 |
Q |
| |
|
|||||||||| || ||| |||| || | |||||||||||| || | |||||| ||||| ||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
11771109 |
aggaagaattggaacctacttctccctggacataatagaacttcgaacaaattgtatccaatatcatcataccacatatttctagctccttgagagaagg |
11771010 |
T |
|
| Q |
218 |
ta |
219 |
Q |
| |
|
|| |
|
|
| T |
11771009 |
ta |
11771008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 10530598 - 10530421
Alignment:
| Q |
42 |
ccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaa |
141 |
Q |
| |
|
|||||||| || | ||||||||||||||| ||||| | | || |||||||||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
10530598 |
ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacgctcaagggacggaaatggttggaaggaagaatttgaaccttc-tcct |
10530500 |
T |
|
| Q |
142 |
tcttgg-cataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggta |
219 |
Q |
| |
|
|||||| || |||||||||| | ||||||| ||||||| |||| |||| || ||||| || |||||| |||||||||| |
|
|
| T |
10530499 |
tcttggacacaatagaactctgagccaattctctccaatatcttcatatcatatatttttaggtcctttagagaaggta |
10530421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 10502561 - 10502401
Alignment:
| Q |
15 |
ttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggtt |
114 |
Q |
| |
|
||||| |||||||| ||||| || | |||||||||| || |||||| |||||||| |||||||| || |||||| ||||||||| || ||||||| |
|
|
| T |
10502561 |
ttaagacgaggaaaggcaaaattgtttccttcaaaggaaagccattccttccaatttggcatgttgaaaaatgttatacactcaagggagggaaatggtt |
10502462 |
T |
|
| Q |
115 |
ggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaa |
178 |
Q |
| |
|
|||||||||||| ||| |||||||| | | || |||||||||| ||||||||| ||||||| |
|
|
| T |
10502461 |
ggaaggaagaatcagaaccttcttcta---cgacacaatagaactctgggccaattttctccaa |
10502401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 10679389 - 10679212
Alignment:
| Q |
42 |
ccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaa |
141 |
Q |
| |
|
|||||||| || | ||||||||||||||| ||||| | | || |||||| ||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
10679389 |
ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacactcaagggacggaaatggttggaaggaagaatttgaaccttc-tcct |
10679291 |
T |
|
| Q |
142 |
tcttgg-cataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggta |
219 |
Q |
| |
|
|||||| || |||||||||| | ||||||| ||||| | |||| |||| || ||||| || |||||| |||||||||| |
|
|
| T |
10679290 |
tcttggacacaatagaactctgagccaattctctccgatatcttcatatcatatatttttaggtcctttagagaaggta |
10679212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 55679 - 55901
Alignment:
| Q |
1 |
gtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaag |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
55679 |
gtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgaacatgttgtcgaactttataaactcaag |
55778 |
T |
|
| Q |
101 |
ggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttct |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55779 |
ggataggaatggttggaaggaagaattagatccttattcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacatatttct |
55878 |
T |
|
| Q |
201 |
atgtccttgagagaaggtaactg |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
55879 |
aagtccttgagagaaggtaactg |
55901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 26908863 - 26908662
Alignment:
| Q |
18 |
agtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttgga |
117 |
Q |
| |
|
||||||||||||| ||| || || ||||||||||||| ||||| ||||||||| ||||||||| || |||||||||||||||||| | |||||||||| |
|
|
| T |
26908863 |
agtcgaggaaaagaaaaattcattccttcaaagggaagccattgattccaatttggcatgttgttaaattttatacgctcaagggattgaaatggttgga |
26908764 |
T |
|
| Q |
118 |
aggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaagg |
217 |
Q |
| |
|
||||| |||| || ||||| ||||||| | |||||||| | || |||||||||||||||||||| | ||||||| ||||||||| |||||||||| |||| |
|
|
| T |
26908763 |
aggaaaaattggagccttcctcaatctggacataatagtaatctgggccaattgtctccaacattttcataccatgtatttctaggtccttgagaaaagg |
26908664 |
T |
|
| Q |
218 |
ta |
219 |
Q |
| |
|
|| |
|
|
| T |
26908663 |
ta |
26908662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 17851017 - 17851221
Alignment:
| Q |
15 |
ttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggtt |
114 |
Q |
| |
|
||||| |||||||||||||| || |||||| ||||||||| |||||| |||||||| |||||||| ||| ||| || ||||||||| || ||||||| |
|
|
| T |
17851017 |
ttaagacgaggaaaagcaaaattgatgcctacaaagggaagccattccttccaatttggcatgttgcgaaacattaaacactcaagggacggaaatggtt |
17851116 |
T |
|
| Q |
115 |
ggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagaga |
214 |
Q |
| |
|
| ||||||||||| || |||||| | || | ||| ||||||||| || || ||| ||||||| ||||||||||||| ||| || |||||| ||||| |
|
|
| T |
17851117 |
gaaaggaagaattggaaccttctcctgcctggacatgatagaactctggaccgattctctccaatatctccataccacaaattagtaggtccttcagaga |
17851216 |
T |
|
| Q |
215 |
aggta |
219 |
Q |
| |
|
||||| |
|
|
| T |
17851217 |
aggta |
17851221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 44955769 - 44955970
Alignment:
| Q |
16 |
taagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaacttt-atacgctcaagggatgggaatggtt |
114 |
Q |
| |
|
|||| |||||||||||||| || | |||| |||||||||||| || |||||||| ||| |||| ||| ||| ||| |||||||||| |||||||||| |
|
|
| T |
44955769 |
taagacgaggaaaagcaaaattgcttcctttaaagggaatccactccttccaatttgacattttgt-gaagtttgatatgctcaagggacgggaatggtt |
44955867 |
T |
|
| Q |
115 |
ggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagag |
213 |
Q |
| |
|
||||||| ||||| || |||||| | ||||| |||| |||||||||||||| ||| |||||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
44955868 |
ggaaggaggaattggaaccttctcctg-cttggacatagtagaactccgggcctattatctccaacttcttcataccatatatttctagatccttgagaa |
44955966 |
T |
|
| Q |
214 |
aagg |
217 |
Q |
| |
|
|||| |
|
|
| T |
44955967 |
aagg |
44955970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 11486988 - 11486846
Alignment:
| Q |
40 |
tgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttc |
139 |
Q |
| |
|
|||||||||| |||| |||||| |||||||| |||||||| | || |||||| |||||||||| ||||||||||||||||||||||| ||| | | |
|
|
| T |
11486988 |
tgccttcaaaaggaagccattccttccaattttgcatgttgacaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc |
11486889 |
T |
|
| Q |
140 |
aatcttggcataatagaactccgggccaattgtctccaacatc |
182 |
Q |
| |
|
|||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
11486888 |
ttccttgacacaatagaactcttggccaattgtctccaacatc |
11486846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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