View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_34 (Length: 236)
Name: NF20902_low_34
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_34 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6595734 - 6595955
Alignment:
| Q |
1 |
aaatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttca |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6595734 |
aaatctaaaagacattcaaatttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttccttttca |
6595833 |
T |
|
| Q |
101 |
aattgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccat-aaaaatatgtgtaatcatcgaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6595834 |
aattgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataaaaaatatgtgtaatcatcgaga |
6595933 |
T |
|
| Q |
200 |
aacaacacttagtaatgatgac |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
6595934 |
aacaacacttagtaatgatgac |
6595955 |
T |
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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 89756 - 89575
Alignment:
| Q |
2 |
aatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaa |
101 |
Q |
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|||| ||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| ||||| |
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| T |
89756 |
aatcgaaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaa |
89657 |
T |
|
| Q |
102 |
attgt--tttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatga-agtggaaaagtccataaaaa |
181 |
Q |
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| T |
89656 |
attgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatt-tgtttgagattggaaaagtccataaaaa |
89575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 25626070 - 25626290
Alignment:
| Q |
2 |
aatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaa |
101 |
Q |
| |
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|||| ||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| ||||| |
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| T |
25626070 |
aatcgaaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaa |
25626169 |
T |
|
| Q |
102 |
at--tgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatga-agtggaaaagtcca-taaaaatatgtgtaatcatcga |
197 |
Q |
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| T |
25626170 |
attgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatt-tgtttgagattggaaaagtccacaaaaaattagtaaaatcatcaa |
25626268 |
T |
|
| Q |
198 |
gaaacaacacttagtaatgatg |
219 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
25626269 |
gaaataacacatagtaatgatg |
25626290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 50688926 - 50688835
Alignment:
| Q |
1 |
aaatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaattt |
92 |
Q |
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||||||||| ||||||| | ||||||||||| |||| | || | | |||||| |||||||||| ||||||||| ||||||| |||| |||| |
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| T |
50688926 |
aaatctaaatgacattccattttgttcacaagatttttgaaaaagaatgttataatattctttgccattgtcacgttgaaaacattttattt |
50688835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 9576955 - 9577111
Alignment:
| Q |
24 |
gttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaatt--gttttaatatgagctct |
121 |
Q |
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|||||||||||||||| || | | | ||||||||| ||| ||||||| ||||||||| ||||||| || ||||||||| |||||||| ||| || |
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| T |
9576955 |
gttcacaaaatttattaaaaagaaagctatcatattatttttcattgtggcattgaaaacttttaattgctctttcaaattatgttttaatgtgaactag |
9577054 |
T |
|
| Q |
122 |
aaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataa |
178 |
Q |
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||||| | | ||||| |||||||||||||||| | ||||| |||||| ||||||| |
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|
| T |
9577055 |
aaattaaagaaaaatagaatgaacttgagatttattttgaagaggaaaattccataa |
9577111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 10535634 - 10535738
Alignment:
| Q |
2 |
aatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaa |
101 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| ||||| |
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| T |
10535634 |
aatcgaaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaa |
10535733 |
T |
|
| Q |
102 |
attgt |
106 |
Q |
| |
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||||| |
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|
| T |
10535734 |
attgt |
10535738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 4803911 - 4804092
Alignment:
| Q |
2 |
aatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaa |
101 |
Q |
| |
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|||| ||||||||||| | ||||||||||||| ||| ||| | || ||||| ||||| ||| |||| |||||||||||| |||| ||||| ||||| |
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| T |
4803911 |
aatcgaaaagacattccattttgttcacaaaacctatgcaaaagagcattatcgtattccttgccattatcacattgaaaacattttatttcacgttcaa |
4804010 |
T |
|
| Q |
102 |
at--tgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatga-agtggaaaagtccataaaaa |
181 |
Q |
| |
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|| ||||||||| ||||| | ||||| ||||||||||| ||||| ||||| |||||| | |||||||||||| ||||| |
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| T |
4804011 |
attgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatta-gtatgagattggaaaagtccacaaaaa |
4804092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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