View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20902_low_36 (Length: 234)
Name: NF20902_low_36
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20902_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 26059272 - 26059057
Alignment:
| Q |
2 |
gccaaccaaaaccaacaagacgaaagctatgatcctgaaatctagtgcggatcaacaaaattcagacccatatctaagcctccaaacaaactagccaaga |
101 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26059272 |
gccagccaaaaccaccaagacgaaagctatgaccctgaaatctagtgcggatcaacaaaattcagacccatagctaagcctccaaacaaactagccaaga |
26059173 |
T |
|
| Q |
102 |
accaccaaaatccaagctccggtagtgaaaagagagcccaaaaacctctgccatccgcgccaaaaacagcagcaacaggtgctcgactgtcaagacagca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26059172 |
accaccaaaatccaagctccggtagtgaaaagagagcccaaaaacctctaccatccgcgccaaaaacagcagcaacaggtgctcgactgtcaagacagca |
26059073 |
T |
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| Q |
202 |
gtagtgcagcgctgct |
217 |
Q |
| |
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|||||||||||||||| |
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| T |
26059072 |
gtagtgcagcgctgct |
26059057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 26068631 - 26068416
Alignment:
| Q |
2 |
gccaaccaaaaccaacaagacgaaagctatgatcctgaaatctagtgcggatcaacaaaattcagacccatatctaagcctccaaacaaactagccaaga |
101 |
Q |
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|
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26068631 |
gccagccaaaaccaccaagacgaaagctatgaccctgaaatctagtgcggatcaacaaaattcagacccatagctaagcctccaaacaaactagccaaga |
26068532 |
T |
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| Q |
102 |
accaccaaaatccaagctccggtagtgaaaagagagcccaaaaacctctgccatccgcgccaaaaacagcagcaacaggtgctcgactgtcaagacagca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26068531 |
accaccaaaatccaagctccggtagtgaaaagagagcccaaaaacctctaccatccgcgccaaaaacagcagcaacaggtgctcgactgtcaagacagca |
26068432 |
T |
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| Q |
202 |
gtagtgcagcgctgct |
217 |
Q |
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|||||||||||||||| |
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| T |
26068431 |
gtagtgcagcgctgct |
26068416 |
T |
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Back To:
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