View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_low_37 (Length: 233)

Name: NF20902_low_37
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_low_37
NF20902_low_37
[»] chr8 (11 HSPs)
chr8 (1-233)||(4565218-4565450)
chr8 (9-181)||(16214713-16214886)
chr8 (3-202)||(14666667-14666866)
chr8 (88-210)||(24576495-24576617)
chr8 (1-145)||(24677436-24677580)
chr8 (151-232)||(23243819-23243900)
chr8 (106-232)||(11776173-11776299)
chr8 (3-140)||(17715703-17715840)
chr8 (1-208)||(20055623-20055829)
chr8 (106-206)||(21416799-21416899)
chr8 (106-185)||(3459415-3459492)
[»] chr6 (21 HSPs)
chr6 (20-233)||(12424158-12424371)
chr6 (1-220)||(14921086-14921305)
chr6 (12-233)||(22497134-22497355)
chr6 (12-233)||(27860784-27861005)
chr6 (12-202)||(18994044-18994234)
chr6 (75-194)||(14184455-14184574)
chr6 (96-210)||(19276997-19277110)
chr6 (100-208)||(13823304-13823410)
chr6 (113-210)||(34064252-34064349)
chr6 (151-233)||(9403206-9403288)
chr6 (96-233)||(12449503-12449640)
chr6 (106-233)||(16343613-16343740)
chr6 (151-233)||(19730566-19730648)
chr6 (81-207)||(31295440-31295566)
chr6 (153-233)||(23768227-23768307)
chr6 (151-210)||(12487971-12488030)
chr6 (105-181)||(31423767-31423842)
chr6 (97-184)||(33596944-33597031)
chr6 (106-184)||(16131051-16131129)
chr6 (115-181)||(22572130-22572196)
chr6 (145-206)||(19305525-19305586)
[»] chr7 (18 HSPs)
chr7 (3-233)||(5925302-5925532)
chr7 (2-233)||(1979096-1979328)
chr7 (13-233)||(18774015-18774235)
chr7 (4-206)||(12264953-12265155)
chr7 (12-233)||(20034350-20034570)
chr7 (56-233)||(23629080-23629256)
chr7 (55-216)||(4781379-4781540)
chr7 (55-216)||(4813810-4813971)
chr7 (108-233)||(13292055-13292180)
chr7 (106-210)||(16987022-16987126)
chr7 (156-233)||(5928991-5929068)
chr7 (72-201)||(17150026-17150155)
chr7 (151-210)||(34854300-34854359)
chr7 (107-199)||(12644854-12644946)
chr7 (106-184)||(9135291-9135369)
chr7 (143-210)||(10287563-10287630)
chr7 (12-92)||(20044773-20044853)
chr7 (145-205)||(43172005-43172065)
[»] chr4 (17 HSPs)
chr4 (13-233)||(1638155-1638375)
chr4 (1-229)||(18463838-18464066)
chr4 (1-233)||(25066178-25066410)
chr4 (12-233)||(14601851-14602072)
chr4 (12-216)||(19564012-19564216)
chr4 (80-233)||(5518574-5518727)
chr4 (23-233)||(17110732-17110941)
chr4 (113-233)||(15514498-15514618)
chr4 (44-233)||(12415470-12415658)
chr4 (106-210)||(15742083-15742187)
chr4 (151-229)||(13896454-13896532)
chr4 (106-206)||(2674504-2674604)
chr4 (106-206)||(12683846-12683946)
chr4 (106-233)||(16012402-16012528)
chr4 (113-184)||(29157185-29157256)
chr4 (110-184)||(19643785-19643859)
chr4 (144-233)||(47253311-47253400)
[»] chr2 (13 HSPs)
chr2 (1-233)||(24157131-24157363)
chr2 (1-233)||(29711052-29711282)
chr2 (3-233)||(24318947-24319176)
chr2 (81-210)||(15390490-15390619)
chr2 (10-169)||(28425973-28426132)
chr2 (108-206)||(15825215-15825313)
chr2 (82-188)||(19290546-19290651)
chr2 (106-206)||(18772309-18772409)
chr2 (146-233)||(18135905-18135992)
chr2 (151-210)||(19050410-19050469)
chr2 (81-206)||(10923070-10923195)
chr2 (107-206)||(3586424-3586523)
chr2 (151-184)||(36267581-36267614)
[»] chr1 (10 HSPs)
chr1 (10-233)||(3590861-3591084)
chr1 (1-194)||(48637612-48637805)
chr1 (10-233)||(21098680-21098902)
chr1 (17-233)||(25408130-25408346)
chr1 (146-210)||(23728790-23728854)
chr1 (87-206)||(4601398-4601517)
chr1 (106-194)||(14254972-14255060)
chr1 (90-233)||(21682504-21682647)
chr1 (113-206)||(12177447-12177540)
chr1 (117-184)||(26977823-26977890)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-231)||(40832-41062)
[»] chr3 (14 HSPs)
chr3 (1-229)||(20118802-20119030)
chr3 (1-218)||(20122604-20122821)
chr3 (22-194)||(17396796-17396968)
chr3 (106-210)||(14860029-14860133)
chr3 (106-233)||(12731491-12731618)
chr3 (83-210)||(25495995-25496122)
chr3 (81-233)||(12516219-12516371)
chr3 (106-186)||(12108500-12108580)
chr3 (81-184)||(20622491-20622594)
chr3 (144-206)||(16704463-16704525)
chr3 (84-137)||(7835482-7835535)
chr3 (106-206)||(1770886-1770987)
chr3 (144-206)||(30606989-30607051)
chr3 (145-206)||(431285-431346)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-233)||(215306-215527)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-233)||(42283-42514)
[»] chr5 (12 HSPs)
chr5 (98-202)||(18799844-18799948)
chr5 (10-202)||(18803982-18804174)
chr5 (72-204)||(21213306-21213438)
chr5 (72-202)||(25679142-25679272)
chr5 (38-194)||(26347953-26348109)
chr5 (12-210)||(24546399-24546597)
chr5 (81-210)||(25828893-25829022)
chr5 (143-233)||(24647322-24647412)
chr5 (81-210)||(22865818-22865947)
chr5 (106-233)||(25537439-25537566)
chr5 (81-207)||(31202280-31202407)
chr5 (144-184)||(26994574-26994614)
[»] scaffold0074 (1 HSPs)
scaffold0074 (55-233)||(53152-53329)
[»] scaffold0543 (1 HSPs)
scaffold0543 (15-198)||(4784-4970)
[»] scaffold0492 (1 HSPs)
scaffold0492 (15-198)||(6330-6516)
[»] scaffold0380 (1 HSPs)
scaffold0380 (106-210)||(6790-6894)
[»] scaffold0205 (2 HSPs)
scaffold0205 (151-233)||(10890-10972)
scaffold0205 (81-210)||(22943-23072)
[»] scaffold0013 (2 HSPs)
scaffold0013 (151-233)||(4399-4481)
scaffold0013 (1-94)||(4278-4371)
[»] scaffold0002 (2 HSPs)
scaffold0002 (146-233)||(379750-379837)
scaffold0002 (143-206)||(120978-121041)
[»] scaffold0479 (1 HSPs)
scaffold0479 (106-210)||(5095-5199)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-227)||(21443-21669)
[»] scaffold0464 (1 HSPs)
scaffold0464 (106-206)||(11574-11673)
[»] scaffold0294 (1 HSPs)
scaffold0294 (106-233)||(172-300)
[»] scaffold0518 (1 HSPs)
scaffold0518 (97-210)||(9031-9144)
[»] scaffold0140 (1 HSPs)
scaffold0140 (97-206)||(6359-6468)
[»] scaffold0291 (1 HSPs)
scaffold0291 (151-206)||(15405-15460)
[»] scaffold0360 (1 HSPs)
scaffold0360 (151-184)||(14005-14038)
[»] scaffold0263 (1 HSPs)
scaffold0263 (106-203)||(20427-20524)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4565218 - 4565450
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4565218 ttaaggccacacactcaagggagcacgccaacttacctgcgccatgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttcccgc 4565317  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4565318 tccggatcacacgccgcataacccggagacagttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 4565417  T
Q  201 acacttcttagactttctctttcagttccatta 233  Q
    |||||||||| |||||||||||||||| |||||    
T  4565418 acacttcttatactttctctttcagtttcatta 4565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 16214886 - 16214713
Alignment:
Q  9 acacactcaagggagcacgccaa-cttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgat 107  Q
    |||||||||| |||||||| ||| ||  |||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||  | | | |||| |     
T  16214886 acacactcaaaggagcacgacaaactcgcctgcgccgtgcaacagtggagcacacctccttgtcgggatcatgctacacgtgtccactcctgttcctaac 16214787  T
Q  108 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 181  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  16214786 cacacaccgcataacccggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaccttcaag 16214713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 14666667 - 14666866
Alignment:
Q  3 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 102  Q
    ||||||||||||||||||||||||| |||||  | |||||| ||| ||||||||  | || ||||||  | ||||| |||||||||||||  | || |||    
T  14666667 aaggccacacactcaagggagcacgtcaactcgcatgcgccatgccacactggactatgcttccttgccgagatcacgctacacgtgtccactccctctc 14666766  T
Q  103 ctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 202  Q
     | |||| || | ||||||||||||||| ||||||||| ||| |||| || |||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  14666767 ttaatcatacacagcataacccggagactgttatgccaagagtgcgcctacataagggtgaactttcttcacccttaaggtacacaaaacttttcacaac 14666866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 24576495 - 24576617
Alignment:
Q  88 tgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacac 187  Q
    ||||||| ||||||||| |||||||| ||||||||| |||| ||||||||      ||| || ||||||||||||||||| |||||||||||||||||||    
T  24576495 tgtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtacac 24576594  T
Q  188 aacacttttcacaacacttctta 210  Q
    |  ||||||||||||||||||||    
T  24576595 attacttttcacaacacttctta 24576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 24677436 - 24677580
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| || || |||| | ||||| ||||| | |||||| ||||| ||||| ||| | |||||||||  ||||||| |||||| ||||||||   |||    
T  24677436 ttaaggctacgcattcaaagaagcacaccaacctgcctgcgtcgtgccacactagagtatgcctccttgccgggatcatgctacatgtgtccttccacgc 24677535  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagc 145  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||    
T  24677536 tcctaatcacacgccgcataacccagagacggttatgccacgagc 24677580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 23243900 - 23243819
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatt 232  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||  | |||||||||||||||    
T  23243900 tatataagagtgaacttgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttccatt 23243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 11776173 - 11776299
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||| | |||||||||||||||||    |||| | ||||||| |||||||||| ||||||||||||||||| | |||||||| |||||||    
T  11776173 atcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacatatcacttttcccaacact 11776272  T
Q  206 tcttagactttctctttcagttccatt 232  Q
     |||| ||  ||| | |||||||||||    
T  11776273 ccttaaacactctttctcagttccatt 11776299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 17715703 - 17715840
Alignment:
Q  3 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 102  Q
    |||||| ||||||||| |||||||||| |||  | |||| ||||| ||||||||| | |||||| ||| ||||||| |||||| ||||||  | ||||||    
T  17715703 aaggcctcacactcaaaggagcacgcctactcgcatgcgtcgtgctacactggagtaagcctccctgtcgggatcatgctacatgtgtccactcccgctc 17715802  T
Q  103 ctgatcacacgccgcataacccggagacggttatgcca 140  Q
     | |||| ||||||||||||||| || |||||||||||    
T  17715803 ttaatcatacgccgcataacccgaaggcggttatgcca 17715840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20055829 - 20055623
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctttt-ccg 99  Q
    ||||||| |||||||||| ||||||||||| ||| | ||| |||||| |||  | |||||  |||||||  |||||||   |||||||||||  |  |||    
T  20055829 ttaaggctacacactcaaaggagcacgccagcttgcgtgcaccgtgccacaaagtagcacatctccttgccgggatcacattacacgtgtcccataaccg 20055730  T
Q  100 ctcctgatcacacgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 198  Q
    | ||| |||| || ||||||  | |||||| |||||||| || | |||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  20055729 c-cctaatcataccccgcatctcacggagatggttatgctcaag-gcgcgcctatataaggatgaacttgcttcaccct-aaggtacacatcacttttca 20055633  T
Q  199 caacacttct 208  Q
    ||||||||||    
T  20055632 caacacttct 20055623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 21416899 - 21416799
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||| |||||||||||||||||||||||||||    |||| | |||| |||||||||||||||||||||| |||||||    || |||||||||||||    
T  21416899 atcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacact 21416800  T
Q  206 t 206  Q
    |    
T  21416799 t 21416799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 3459415 - 3459492
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtac 185  Q
    ||||||||||||||||||| |||||||||| | | | | ||||| ||||||||||||||||||||||| |||||||||||    
T  3459415 atcacacgccgcataacccagagacggttacgac-caaccgcgcctatataagggtgaacttgcttca-cctcaaggtac 3459492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 12424158 - 12424371
Alignment:
Q  20 ggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcat 119  Q
    ||||||| ||||||| |  ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||| || |||||| |||||||    
T  12424158 ggagcacaccaacttgcacgcgccgtgcaacactggagtacgcctccttgatgggatcacgctacacgtgtcctttcccgcttctaatcacatgccgcat 12424257  T
Q  120 aacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctc 219  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12424258 aacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaacactttttagactttctc 12424357  T
Q  220 tttcagttccatta 233  Q
    | ||||||||||||    
T  12424358 tctcagttccatta 12424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14921086 - 14921305
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    |||||||  ||||||||| ||||||| ||||| |  |||| |||||||| ||   |||||||||| |||||||||||| || ||||||||||||  ||||    
T  14921086 ttaaggctgcacactcaaaggagcacaccaacatgtctgcaccgtgcaataccatagcacgcctcattgttgggatcacgcaacacgtgtccttccccgc 14921185  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    |||| |||| |||||||||||| || |||||||||||||| |||| ||| |||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  14921186 tcctaatcatacgccgcataactcgaagacggttatgccatgagcacgcctatataagtgtgaacttgcttcaccctccaaggacacaacacttttcaca 14921285  T
Q  201 acacttcttagactttctct 220  Q
     ||||||||| |||||||||    
T  14921286 tcacttcttacactttctct 14921305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 22497134 - 22497355
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| |||||||| || ||| | ||||  |||| |||  ||| ||||| |||||| || ||||| |||||||||| |||| ||||| ||| ||||||    
T  22497134 cactcaaaggagcacgtcagcttgcatgcgttgtgccacataggaacacgcttccttgctgagatcacgctacacgtgcccttctccgcccctaatcaca 22497233  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttag 211  Q
    || |||||||||| |||| |||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  22497234 cgtcgcataacccagagatggttatgccatgagcgtgtctatatatgggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactttttat 22497333  T
Q  212 actttctctttcagttccatta 233  Q
    ||| |||||||| |||||||||    
T  22497334 actctctctttctgttccatta 22497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 27860784 - 27861005
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||||||| |||||||| || ||||| || ||| |||| ||||||| |||||| |    |||||   ||||| |||||||  |||||||| ||||||    
T  27860784 cactcaagggaacacgccaagttgcctgcaccatgccacacaggagcacacctcctcgcaaagatcactatacacctgtccttccccgctcctaatcaca 27860883  T
Q  112 cgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    |||||||||||||||||||||||||| |||  | ||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27860884 cgccgcataacccggagacggttatggccaaca-cgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaacacttctta 27860982  T
Q  211 gactttctctttcagttccatta 233  Q
     ||| ||||||||||||||||||    
T  27860983 cactctctctttcagttccatta 27861005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 18994234 - 18994044
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| |||||| || ||||  |||||| ||||| |||||||||||| ||||||||  ||||||| ||||||  |||||  | |||||||| |||| |    
T  18994234 cactcaaaggagcatgcgaactcgcctgcgtcgtgccacactggagcacacctccttgccgggatcacgctacatttgtccactcccgctcctaatcaaa 18994135  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 202  Q
    | |||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  18994134 caccgcataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttcaacctcagggtacacaacacttttaacaac 18994044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 14184455 - 14184574
Alignment:
Q  75 atcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcac 174  Q
    |||| |||||||||||||  | ||| |||| |||||||||| ||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  14184455 atcacgctacacgtgtccactcccgttcctaatcacacgcctcataacccgaagatggttatgccacgagcgcacctatataagggtgaacttgcttcac 14184554  T
Q  175 cctcaaggtacacaacactt 194  Q
    ||||||||||||||||||||    
T  14184555 cctcaaggtacacaacactt 14184574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 19276997 - 19277110
Alignment:
Q  96 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 195  Q
    ||||||||| |||| ||||||||||||| | ||||||||||| |   ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  19276997 tccgctcctaatcatacgccgcataaccag-agacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttt 19277095  T
Q  196 tcacaacacttctta 210  Q
    |||||||||||||||    
T  19277096 tcacaacacttctta 19277110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 13823304 - 13823410
Alignment:
Q  100 ctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcac 199  Q
    ||||| |||| |||||||||||| |||||||||||||||||  || |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  13823304 ctccttatcatacgccgcataactcggagacggttatgcca--agtgcgcctatataaaggtgaacttgcttcaccctcaaggtacacaacactttttac 13823401  T
Q  200 aacacttct 208  Q
    |||| ||||    
T  13823402 aacaattct 13823410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 34064349 - 34064252
Alignment:
Q  113 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    |||||||||||||| |||||||||| |     ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34064349 gccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttctta 34064252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 9403288 - 9403206
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||  ||| | ||||||||||||    
T  9403288 tatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccatta 9403206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 12449503 - 12449640
Alignment:
Q  96 tccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttt 195  Q
    ||||| ||| ||||||| | |||||||| |||||| |||||| |    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  12449503 tccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcacttt 12449602  T
Q  196 tcacaacacttcttagactttctctttcagttccatta 233  Q
     |||||||||||||| ||  ||| |||||| |||||||    
T  12449603 ccacaacacttcttacacactctttttcagctccatta 12449640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 16343740 - 16343613
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||| |||||||||  | |||||||||||||||     ||| || |||||||| |||||||||||||||  |||| ||||||| |||||| |||||||||    
T  16343740 atcatacgccgcatctcacggagacggttatgctcaacgcgtgcctatataagtgtgaacttgcttcacattcaaagtacacatcactttccacaacact 16343641  T
Q  206 tcttagactttctctttcagttccatta 233  Q
    ||||| ||||||||| ||||||||||||    
T  16343640 tcttacactttctctctcagttccatta 16343613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 19730566 - 19730648
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| ||  ||| | ||||||||||||    
T  19730566 tatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccatta 19730648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 31295440 - 31295566
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    ||||||||||| |  |||| |||| ||||||||  |||||||||| ||||||||||| |     | ||| ||| |||||||||||||||||||||||| |    
T  31295440 ctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaagggtgaacttgcttcaccctcga 31295539  T
Q  181 ggtacacaacacttttcacaacacttc 207  Q
    |||||| | ||||||||||||||||||    
T  31295540 ggtacatatcacttttcacaacacttc 31295566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 23768307 - 23768227
Alignment:
Q  153 tataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||||||||||||||| |||||  ||||||||| |||||| |||||||||||||| ||  | ||||||||||| ||||    
T  23768307 tataagggtgaacttgctttacccttgaggtacacatcactttccacaacacttcttacacactatctttcagttcaatta 23768227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 12487971 - 12488030
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||||||||||| ||||    
T  12487971 tatataagggtgaacttgtatcaccctcaatgtacacatcacttttcacaacactactta 12488030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 31423767 - 31423842
Alignment:
Q  105 gatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 181  Q
    ||||||||| ||||||||||||| ||||| |||||     ||||| |||||||||||| ||||||||||||||||||    
T  31423767 gatcacacgtcgcataacccggacacggt-atgcccaacacgcgcctatataagggtgcacttgcttcaccctcaag 31423842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 33597031 - 33596944
Alignment:
Q  97 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||| ||| |||| ||||||||||| |||| |||  ||||||    ||||||| |||||||| |||||||||||||| ||||||||||    
T  33597031 ccgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgcttcatcctcaaggta 33596944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 16131129 - 16131051
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||||| ||| ||||| |||||||| |||||||     |||||| ||||||||||| |||||| |||||||||||||||    
T  16131129 atcacatgccacataatccggagacagttatgcttaatgcgcgcctatataagggtaaacttgtttcaccctcaaggta 16131051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 22572196 - 22572130
Alignment:
Q  115 cgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 181  Q
    ||||||||| ||||||||||||||     ||||||  |||||| |||||||||||||||||||||||    
T  22572196 cgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaag 22572130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 19305586 - 19305525
Alignment:
Q  145 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    ||||| ||| ||||||||| ||||||||||||||||||||     |||||||||||||||||    
T  19305586 cgcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactt 19305525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 5925302 - 5925532
Alignment:
Q  3 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 102  Q
    ||||| || ||||||| |||||||| |||||| ||| |   |||||||||||||| ||||||||||   ||||||| |||||||||||||||||||||      
T  5925302 aaggctacgcactcaaaggagcacgacaacttgcctactatgtgcaacactggagtacgcctccttcccgggatcacgctacacgtgtccttttccgcct 5925401  T
Q  103 ctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5925402 cagatcacacgccgcataacccggagacggttatgccacgagcgcgcctacataagggtgaacttgcttcaccctcaaggaacacaacacttttcacgac 5925501  T
Q  203 acttcttagactttctctttcagttccatta 233  Q
    |||||||||||||||||| ||||||||||||    
T  5925502 acttcttagactttctctctcagttccatta 5925532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 1979328 - 1979096
Alignment:
Q  2 taaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgct 101  Q
    |||||| |||||||||| ||||||||||||| | | |||| ||||| |||||||| ||| ||||||||  ||||||| |||||| ||||||||| || ||    
T  1979328 taaggctacacactcaaaggagcacgccaacctgcgtgcgtcgtgcgacactggaccacacctccttgccgggatcatgctacatgtgtcctttcccact 1979229  T
Q  102 cctga-tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    ||| | ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||| | |||  ||||||||||| ||||||    
T  1979228 cctaaatcacacgccgcataacccgcagacggttatgccacgagcgtgcctatataaaggtgaacttgcttcactcccaatatacacaacactcttcaca 1979129  T
Q  201 acacttcttagactttctctttcagttccatta 233  Q
    |||||||||||||||||||| ||||||||||||    
T  1979128 acacttcttagactttctctctcagttccatta 1979096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 18774235 - 18774015
Alignment:
Q  13 actcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacac 112  Q
    |||||||||| |||||||||| | ||||| ||||| |||||||||||||||||||||  |||||||  ||||||||||||  | || ||||| |||| ||    
T  18774235 actcaagggaacacgccaactcatctgcgtcgtgccacactggagcacgcctccttgacgggatcacactacacgtgtccactcccactcctaatcatac 18774136  T
Q  113 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttaga 212  Q
    |||||||||| ||||||||||||||||| |||| ||  |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||    
T  18774135 gccgcataactcggagacggttatgccaagagcacgtctatataagggtgaatttgtttcaccctcaaggtacacaacacttttcactacacttctttga 18774036  T
Q  213 ctttctctttcagttccatta 233  Q
    |||||||| ||||||||||||    
T  18774035 ctttctctctcagttccatta 18774015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 12264953 - 12265155
Alignment:
Q  4 aggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcc 103  Q
    |||| |||||||||||||||||||||||||| | ||||||||| | ||| ||||||||||||||||| ||||||| |||| | ||||||||  ||   ||    
T  12264953 aggctacacactcaagggagcacgccaacttgcatgcgccgtgtaccacaggagcacgcctccttgtcgggatcacgctatatgtgtccttccccatccc 12265052  T
Q  104 tgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaaca 203  Q
    | |||| ||||||||||||||||||| ||||||||  |||||| || ||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  12265053 taatcatacgccgcataacccggagatggttatgcttcgagcgtgcctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaaca 12265152  T
Q  204 ctt 206  Q
    |||    
T  12265153 ctt 12265155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 20034570 - 20034350
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| |||||||||||| |  |||||| | ||| ||| |||| || || ||| ||| ||||||| ||||||| |||||  | |||||| | |||| |    
T  20034570 cactcaaaggagcacgccaattcgcctgcggcatgccacattggaccatgcttccctgtcgggatcacgctacacatgtccactcccgctcttaatcata 20034471  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttag 211  Q
     ||||||||||||||||||||| |||||| ||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |     
T  20034470 tgccgcataacccggagacggtcatgccaagagcgggcctatataagggtgtacttgctttaccctcaaggtacacaacacttttcactacacttctaaa 20034371  T
Q  212 actttctctttcagttccatta 233  Q
    ||||| ||| ||||||||||||    
T  20034370 acttt-tctctcagttccatta 20034350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 23629256 - 23629080
Alignment:
Q  56 agcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatat 155  Q
    ||||||||||| ||||||||||| |||||||||||||  | |||||||| |||| |||||||||||||||||||| ||||||||| ||| |||| |||||    
T  23629256 agcacgcctccctgttgggatcacgctacacgtgtccactcccgctcctaatcatacgccgcataacccggagacagttatgccaagagagcgcctatat 23629157  T
Q  156 aagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||| | ||  |||||||||| |||||| |||||||| |||||||||| ||||| ||||||| ||| ||||||||||||    
T  23629156 aagtgggacattgcttcaccatcaaggcacacaacaattttcacaactcttctaagacttt-tctatcagttccatta 23629080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 4781379 - 4781540
Alignment:
Q  55 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 154  Q
    |||||||||||| ||| ||||||| ||||||||||| | || |||||||| |||| |||||| |||| |||  || |||||||||| ||| |||| ||||    
T  4781379 gagcacgcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcctata 4781478  T
Q  155 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||    
T  4781479 taagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttt 4781540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 4813810 - 4813971
Alignment:
Q  55 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 154  Q
    |||||||||||| ||| ||||||| ||||||||||| | || |||||||| |||| |||||| |||| |||  || |||||||||| ||| |||| ||||    
T  4813810 gagcacgcctccctgtcgggatcacgctacacgtgttcattcccgctcctaatcatacgccgtataatccgaggatggttatgccaagagtgcgcctata 4813909  T
Q  155 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||    
T  4813910 taagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctcctaagacttt 4813971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 13292055 - 13292180
Alignment:
Q  108 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttc 207  Q
    |||||||||||||||||||||||||||||| |    |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13292055 cacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttc 13292154  T
Q  208 ttagactttctctttcagttccatta 233  Q
    ||| ||  ||| |||||||| |||||    
T  13292155 ttacacactctttttcagtttcatta 13292180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 16987022 - 16987126
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    ||||||| |||||||| ||||||||||||||| |    |||||| ||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  16987022 atcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaacact 16987121  T
Q  206 tctta 210  Q
    |||||    
T  16987122 tctta 16987126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 5928991 - 5929068
Alignment:
Q  156 aagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  5928991 aagggtgaatttgcttcacccccaagggacacatcacttttcacaacacttcttacactctctctttcagttccatta 5929068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 17150155 - 17150026
Alignment:
Q  72 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 171  Q
    ||||||| |||||||||||||  | ||| | || |||| | |||||||| ||| |||||||||| ||||  ||| ||| |||||| |||| |||||||||    
T  17150155 gggatcatgctacacgtgtccactcccgtttctaatcatatgccgcatagccctgagacggttaagccaaaagcacgcctatataggggttaacttgctt 17150056  T
Q  172 caccctcaaggtacacaacacttttcacaa 201  Q
    |||||||||| ||| ||||| |||||||||    
T  17150055 caccctcaagctacgcaacaattttcacaa 17150026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 34854359 - 34854300
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||    
T  34854359 tatataagggtgaacttgtttcaccctcagagtacacatcacttttcacaacatttctta 34854300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 12644946 - 12644854
Alignment:
Q  107 tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcac 199  Q
    ||||||| ||||||||||| ||||||||||| |    |||||| | || ||||||||||||||||||||||||| |||||   ||||||||||    
T  12644946 tcacacgtcgcataacccgaagacggttatgaccaacgcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcac 12644854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 9135291 - 9135369
Alignment:
Q  106 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||||||||  ||||||||||||||||||||| |||  | || |  |||||||||||||| |||||||||||||||||||    
T  9135291 atcacacgctacataacccggagacggttatgaccaata-cgtgtctatataagggtgaatttgcttcaccctcaaggta 9135369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 10287563 - 10287630
Alignment:
Q  143 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    ||||||| ||||||||||| |||||| | |||||||||||||     |||||||||||||||||||||    
T  10287563 agcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttctta 10287630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 20044853 - 20044773
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcc 92  Q
    ||||||| |||||||||||| |  |||||| ||| | ||| ||||||| |||||| ||| ||||||| ||||||| |||||    
T  20044853 cactcaaaggagcacgccaattcgcctgcgtcgttccacattggagcatgcctccctgtcgggatcacgctacacatgtcc 20044773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 43172005 - 43172065
Alignment:
Q  145 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    ||||| |||||||||||||| ||||||||||||||| |||     ||||||||||||||||    
T  43172005 cgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 1638155 - 1638375
Alignment:
Q  13 actcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacac 112  Q
    |||||| ||||||||||||| |  |||| |||||| ||||  ||||||||||| |||   |||||| |||||||||||||||  |||||||| |||| |     
T  1638155 actcaaaggagcacgccaacatggctgcaccgtgccacaccagagcacgcctcattgccaggatcacgctacacgtgtccttccccgctcctaatcatat 1638254  T
Q  113 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttaga 212  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1638255 gccgcataacccggagacggttatgccacgagcgcacctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcttaacacttcttaga 1638354  T
Q  213 ctttctctttcagttccatta 233  Q
    |||||||| ||||||||||||    
T  1638355 ctttctctctcagttccatta 1638375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18464066 - 18463838
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| |||||||||| ||||||||||||| | |||||  ||||| ||||||||||||||||| |||| ||||||| |||| | |||| |||| |||     
T  18464066 ttaaggctacacactcaaaggagcacgccaacatgcctgcatcgtgccacactggagcacgcctcattgtcgggatcacgctaaatgtgttctttcccga 18463967  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||| |||||||||||| ||||||||||||||||||    
T  18463966 tcctaatcatacgccgcataacccggagacggttatgccacaagcgcgcctatataaggatgaaattgtttcaccctcaagatacacaacacttttcaca 18463867  T
Q  201 acacttcttagactttctctttcagttcc 229  Q
    ||||| |||| || |||||| | ||||||    
T  18463866 acactccttacaccttctctctaagttcc 18463838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25066410 - 25066178
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| ||||||| || ||| ||| |||||   || ||||| ||| ||| |||||||| |||| |||  ||||||  ||||||| |||||||  | ||    
T  25066410 ttaaggctacacacttaatggaacactccaacaagcccgcgccctgctacattggagcacacctcgttgacgggatcgcgctacacatgtccttcccggc 25066311  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    ||||  ||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25066310 tcctagtcatacgccgcataacccagagacggttatgccacaagcgcgcctatataagggtaaacttgcttcaacctcaaggtacacaacacttttcaca 25066211  T
Q  201 acacttcttagactttctctttcagttccatta 233  Q
    |||| ||||||| ||||||| | ||||||||||    
T  25066210 acacgtcttagattttctctcttagttccatta 25066178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 14601851 - 14602072
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| ||||||||||| ||| | ||| ||||||  ||| | ||||| |||||| || ||||||    |||||||||||||  |||||||| ||||||    
T  14601851 cactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcaca 14601950  T
Q  112 cgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    ||||||||||||||||||| ||||||  ||  | | ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14601951 cgccgcataacccggagacagttatgatcaaca-cacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 14602049  T
Q  211 gactttctctttcagttccatta 233  Q
     ||  |||||||||||| |||||    
T  14602050 cacactctctttcagtttcatta 14602072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 19564216 - 19564012
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| || |||| ||||||  ||||| |||||| ||||||||||||||||||  || |||||||  ||||||||||||  | |||||||| |||| |    
T  19564216 cactcaaaggggcacaccaactcgcctgcaccgtgccacactggagcacgcctccccgtcgggatcacactacacgtgtccactcccgctcctaatcata 19564117  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttag 211  Q
     |||| |||| |  ||||||||||||||| |||  | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||    
T  19564116 tgccgtataatctagagacggttatgccaagagtacacctatataacggtgaacttgcttcaccctcaaggtacacaacacttttcacaaccctcctaag 19564017  T
Q  212 acttt 216  Q
    |||||    
T  19564016 acttt 19564012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 5518727 - 5518574
Alignment:
Q  80 gctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctca 179  Q
    |||||||||||||||  | |||||| |||| |||||  ||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||    
T  5518727 gctacacgtgtccttccctgctcctaatcatacgccttataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctca 5518628  T
Q  180 aggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||||| || |||||| |||||||||||||| || |||||| ||||||| ||||    
T  5518627 aggtacgcatcactttccacaacacttcttacacattctctctcagttcaatta 5518574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 17110941 - 17110732
Alignment:
Q  23 gcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataac 122  Q
    |||||||||||  ||| || | ||| ||| |||||||||||||||||| ||||||| | |||| |||| |  |  ||||||| |||| | ||||||||||    
T  17110941 gcacgccaactcgcctacgtcatgccacattggagcacgcctccttgtcgggatcacggtacatgtgttcactctcgctcctaatcatatgccgcataac 17110842  T
Q  123 ccggagacggttatgccacgag--cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctct 220  Q
     |  |||||||||||||| |||  ||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||| |||    
T  17110841 ac--agacggttatgccaagagagcgcgcctatgtaagggtgaacttgcttcaccctcaagatacacaatacttttcgcaacacttctaagacttt-tct 17110745  T
Q  221 ttcagttccatta 233  Q
     ||| ||||||||    
T  17110744 ctcaattccatta 17110732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 15514498 - 15514618
Alignment:
Q  113 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttaga 212  Q
    ||||||||||| ||||| ||||||| |  | ||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |    
T  15514498 gccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttaca 15514597  T
Q  213 ctttctctttcagttccatta 233  Q
    |  ||| ||||||||||||||    
T  15514598 cactctttttcagttccatta 15514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 12415658 - 12415470
Alignment:
Q  44 gtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacga 143  Q
    |||| ||||||||||||| |||| ||   |||||| ||||||| |||||  ||| | |||| || | ||||||||||| | |||||||||||| ||| ||    
T  12415658 gtgccacactggagcacgtctccctgccaggatcacgctacacatgtccacttctgttcctaattatacgccgcataatctggagacggttattccaaga 12415559  T
Q  144 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
     ||||  ||||||||||||||||| ||| |||||||| ||||||||||||||| ||||| || || |||| |||||| ||||||||||||    
T  12415558 tcgcgtctatataagggtgaacttactttaccctcaaagtacacaacactttttacaactctcctaagac-ttctctctcagttccatta 12415470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 15742083 - 15742187
Alignment:
Q  106 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacac 204  Q
    |||||||||||||||||||||||||||||||| |||  | ||||| |||||||||||||| ||||||||  ||||||||||||| |||||||||||||||    
T  15742083 atcacacgccgcataacccggagacggttatggccaaca-cgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacac 15742181  T
Q  205 ttctta 210  Q
    ||||||    
T  15742182 ttctta 15742187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 13896454 - 13896532
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttcc 229  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||| ||  ||||||||||||||    
T  13896454 tatataagggtgaactttctttaccctcaaggtacacatcactttccacaacacttcttatacaatctctttcagttcc 13896532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 2674504 - 2674604
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    ||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||| ||||| ||||||||||     ||||||||||||||||    
T  2674504 atcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttacttcatcctcaaggtatgattcacttttcacaacact 2674603  T
Q  206 t 206  Q
    |    
T  2674604 t 2674604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 12683946 - 12683846
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||| ||| |||||||| |||||||||||||||     |||||| || |||||||||||||||||||||||| ||||||     ||||||||||||||||    
T  12683946 atcatacgtcgcataactcggagacggttatgcttaatgcgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacact 12683847  T
Q  206 t 206  Q
    |    
T  12683846 t 12683846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 16012402 - 16012528
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    ||||||||||||||||| |||| ||| ||||  |    |||||| ||||||||||||||||||||||| ||||||| |||| | ||||| ||||||  ||    
T  16012402 atcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttca-cctcaagatacatatcacttctcacaatgct 16012500  T
Q  206 tcttagactttctctttcagttccatta 233  Q
    ||||| ||  ||| | ||||||||||||    
T  16012501 tcttacacactctatctcagttccatta 16012528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 29157256 - 29157185
Alignment:
Q  113 gccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||||||||||| ||||||||||| || | | |||||| ||||||||||||||||| ||||||| ||||||||    
T  29157256 gccgcataacccagagacggttat-cctctacgcgcgcctatataagggtgaacttacttcaccatcaaggta 29157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 19643859 - 19643785
Alignment:
Q  110 cacgccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    ||||||||||||| | ||||||||||| || | | || ||| |||||||||||||||||| |||||||||||||||    
T  19643859 cacgccgcataactcagagacggttat-cctcaacgcacgcctatataagggtgaacttgtttcaccctcaaggta 19643785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 47253400 - 47253311
Alignment:
Q  144 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||||| |||||||||||||  | |||||||||||||||||     ||||||||||||||||| ||| ||  ||| | ||||||||||||    
T  47253400 gcgcgcctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccatta 47253311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24157131 - 24157363
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| ||||||||||||||| || | ||| ||||||| |||||| |||| |||||||||||||| | |||||||| ||||||| |||||||  ||||    
T  24157131 ttaaggctacacactcaagggagtacacaaacctacctgcaccgtgccacacaggagcacgcctcctcgctgggatcacgctacacatgtccttccccgc 24157230  T
Q  101 tcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcac 199  Q
    |||| ||||||  ||||||||||||||||| |||| | |||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24157231 tcctaatcacataccgcataacccggagacagttagggccaaca-cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaatacttttcac 24157329  T
Q  200 aacacttcttagactttctctttcagttccatta 233  Q
    ||||||||||||||||| ||| ||||||||||||    
T  24157330 aacacttcttagactttatctctcagttccatta 24157363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29711282 - 29711052
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| || |||||||| ||||||||||||||  |||| |||||| | || |||||| ||||||| |  ||||||| ||||||||| |||||  ||||    
T  29711282 ttaaggctactcactcaagagagcacgccaacttgtctgcaccgtgccatacaggagcatgcctcctcgcagggatcacgctacacgtatccttccccgc 29711183  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    |||| |||||| |||||||||| |||||||||||| |||    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29711182 tcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 29711083  T
Q  201 acacttcttagactttctctttcagttccatta 233  Q
    ||||||| || ||  ||||||||| ||||||||    
T  29711082 acacttcgtacac--tctctttcaattccatta 29711052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 24319176 - 24318947
Alignment:
Q  3 aaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctc 102  Q
    |||||| |||||||||  ||| |||||||||  |||||||||||| ||||| |||||| ||||| |   ||||||| | | |||||||||  | | | ||    
T  24319176 aaggcctcacactcaaatgagtacgccaactcgcctgcgccgtgccacactagagcacacctccctaccgggatcacgtttcacgtgtccactccagttc 24319077  T
Q  103 ctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 202  Q
    || |||| |||  ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24319076 ctaatcatacgttgcataacccagagacggttatgccaagagcgcgcctatataagggtgaacttgcttcaccctcaatgtacacaacacttttcacaac 24318977  T
Q  203 acttcttagactttctctttcagttccatta 233  Q
     || || ||||||| |||  |||||||||||    
T  24318976 tctcctaagacttt-tctcccagttccatta 24318947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 15390490 - 15390619
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    |||||||||||||  ||||  ||| |||||||  |||||||||||| |||||||||| |    |||||| ||||||||||||||||||||||||||||||    
T  15390490 ctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcaccctcaa 15390589  T
Q  181 ggtacacaacacttttcacaacacttctta 210  Q
    |||||||| |||||||||||||||||||||    
T  15390590 ggtacacatcacttttcacaacacttctta 15390619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 28425973 - 28426132
Alignment:
Q  10 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 109  Q
    ||||||||| || |||||||||||| |||||| ||||| |||| | ||||| ||||| ||  ||||||| ||||||| |||||  | | |||||| ||||    
T  28425973 cacactcaaaggggcacgccaacttgcctgcgtcgtgccacaccgaagcacacctccctgccgggatcatgctacacatgtccactcctgctcctaatca 28426072  T
Q  110 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgc 169  Q
     | ||| |||||||||||||||||||| ||  |||||||| |||||||||||||||||||    
T  28426073 tatgccacataacccggagacggttatacctagagcgcgcctatataagggtgaacttgc 28426132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 15825313 - 15825215
Alignment:
Q  108 cacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    ||||||||||||||| || ||||||||||| |    |||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15825313 cacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactt 15825215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 19290651 - 19290546
Alignment:
Q  82 tacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaag 181  Q
    |||||||||||||| ||||| || |||| |||| |||||||||||||||||||||| | | |||||   ||||||||||||||||||||||||||| |||    
T  19290651 tacacgtgtccttt-ccgcttctaatcatacgctgcataacccggagacggttatgacccaagcgcatctatataagggtgaacttgcttcacccttaag 19290553  T
Q  182 gtacaca 188  Q
    |||||||    
T  19290552 gtacaca 19290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 18772409 - 18772309
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||||| |||||||| |||||| |    | | |  ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  18772409 atcacacgccgcataatccggagacagttatgaccaacgtgtgtctatataagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaacact 18772310  T
Q  206 t 206  Q
    |    
T  18772309 t 18772309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 18135992 - 18135905
Alignment:
Q  146 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||| ||||||||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||| ||  ||| | ||||||||||||    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccatta 18135905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 19050410 - 19050469
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    ||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||    
T  19050410 tatataagggtgaacttacttcactctcagggtacacatcacttttcacaacacttctta 19050469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 10923070 - 10923195
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctca 179  Q
    ||||||||||||| |||||   || |||||||||||||||| ||| |||| |||||| |||  | | ||  |||||||||||||||||||||||||||||    
T  10923070 ctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaaca-cacgtgtatataagggtgaacttgcttcaccctca 10923168  T
Q  180 aggtacacaacacttttcacaacactt 206  Q
    ||| ||||  ||||||||||| |||||    
T  10923169 aggcacacttcacttttcacagcactt 10923195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 3586523 - 3586424
Alignment:
Q  107 tcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    |||||||||||||||||  ||  |||||||| |    |||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  3586523 tcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 3586424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 36267614 - 36267581
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggta 184  Q
    ||||||||||||||||||||||||||||||||||    
T  36267614 tatataagggtgaacttgcttcaccctcaaggta 36267581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 3591084 - 3590861
Alignment:
Q  10 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 109  Q
    ||||||||| ||| |||| |||||  ||||| |||| | |||||||||||||||||| || |||||||| |||||||||||||  | |||||| | ||||    
T  3591084 cacactcaaaggaacacgacaactcgcctgcaccgtaccacactggagcacgcctccctgctgggatcacgctacacgtgtccactcccgctcataatca 3590985  T
Q  110 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctc-aaggtacacaacacttttcacaacacttct 208  Q
     |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||    
T  3590984 tacgccgcataacccggagacggttatgccaagagtgcgcctatataagggtgaacttgcttcaccctcaaaggtacacaacacttttcacaactctcct 3590885  T
Q  209 tagactttctctttcagttccatta 233  Q
     ||||||| ||| ||||||||||||    
T  3590884 aagacttt-tctctcagttccatta 3590861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 48637805 - 48637612
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| ||||| | |||||||||| ||||||| ||||| |||||  |||| |||||||||||||| || ||||||| ||||||| |||| ||    ||    
T  48637805 ttaaggctacacatttaagggagcacaccaacttgcctgcaccgtgtcacaccggagcacgcctcctcgtcgggatcacgctacacttgtctttccatgc 48637706  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 194  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  48637705 tcctaatcacacgccgcataacacggagacggttatgccacgagcccgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 48637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 21098680 - 21098902
Alignment:
Q  10 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 109  Q
    ||||||||| ||||||||| |||   | || ||||||| ||||||||| |||||||| ||   |||| |||||||||||||||  ||   ||||| ||||    
T  21098680 cacactcaaaggagcacgctaacccgcttgtgccgtgccacactggagtacgcctccctgccaggattaggctacacgtgtccgctttaactcctaatca 21098779  T
Q  110 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctt 209  Q
     || ||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |     
T  21098780 tacaccgcataactcagagacggttatgccaagagcgcacctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcataacacttata 21098879  T
Q  210 agactttctctttcagttccatta 233  Q
    | ||||| ||| ||||||||||||    
T  21098880 atacttt-tctatcagttccatta 21098902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 25408346 - 25408130
Alignment:
Q  17 aagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccg 116  Q
    |||||||||||||| ||| ||||| |||||| |||  |||||||||||||| |   |||||| ||||||| |||||||  ||||| || ||||||||||     
T  25408346 aagggagcacgccagcttgcctgcaccgtgccacagaggagcacgcctcctcgcaaggatcatgctacacatgtccttccccgcttctaatcacacgcct 25408247  T
Q  117 cataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagacttt 216  Q
     ||||||||||||| ||||||     | | ||| |||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||  |    
T  25408246 tataacccggagacagttatgaacaaaacacgcctatgaaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttacacact 25408147  T
Q  217 ctctttcagttccatta 233  Q
    ||||||||||| |||||    
T  25408146 ctctttcagtttcatta 25408130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 23728790 - 23728854
Alignment:
Q  146 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  23728790 gcgcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttctta 23728854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 4601398 - 4601517
Alignment:
Q  87 gtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca 186  Q
    |||||||  ||||| ||| |||||||| |||||||||||||||||| |||| |    |||||| |||||||||||||||||||||||||||||||| |||    
T  4601398 gtgtcctactccgcacctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggaca 4601497  T
Q  187 caacacttttcacaacactt 206  Q
    || ||  ||||||| |||||    
T  4601498 catcaaatttcacagcactt 4601517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 14254972 - 14255060
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 194  Q
    |||| ||||||||||||| |||||  |||||| |   |||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  14254972 atcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaaggtacacaacactt 14255060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 21682504 - 21682647
Alignment:
Q  90 tccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaa 189  Q
    |||||| || ||||| ||||||||| ||||||||| |||||  |||||      || ||| |||||||||||||| |||| ||||||||||||||||||     
T  21682504 tcctttccccctcctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacat 21682603  T
Q  190 cacttttcacaacacttcttagactttctctttcagttccatta 233  Q
     ||||||||||| | |||||| ||  ||||||  ||||||||||    
T  21682604 tacttttcacaatatttcttacacactctcttctagttccatta 21682647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 12177540 - 12177447
Alignment:
Q  113 gccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    |||||||||| ||||||| ||||||||    |||| | ||||||||| ||||||||||||  |||||||||| |   |||||||||||||||||    
T  12177540 gccgcataactcggagacagttatgcccaatgcgcacctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactt 12177447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 26977890 - 26977823
Alignment:
Q  117 cataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||||||| ||||||||||| ||    |||||| ||||||||||| || |||||||||||||||||||    
T  26977890 cataacccagagacggttattcccatcgcgcgcctatataagggtcaaattgcttcaccctcaaggta 26977823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41062 - 40832
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||  |||  ||||||||||||| |  ||||||| ||||||| |||| ||  |||     
T  41062 ttaaggctacacactcaagggagcacgccaactttcctgcaccgtgccgcacaagagcacgcctcctcgcagggatcacgctacacatgtcgttccccgt 40963  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    || | |||||| ||||||||||||||||||||||||| |  | || ||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |    
T  40962 tcttaatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcata 40863  T
Q  201 acacttcttagactttctctttcagttccat 231  Q
    ||||||| || ||| ||||||||||||||||    
T  40862 acacttcctacactctctctttcagttccat 40832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20118802 - 20119030
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| ||||||| || ||||||||||||| | ||||| ||  || ||||  ||||||||||| |||| ||||||| ||||||  |||||||| ||||    
T  20118802 ttaaggctacacacttaaaggagcacgccaacatgcctgcaccaagccacaccagagcacgcctcattgtcgggatcacgctacatatgtcctttcccgc 20118901  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    |||| |||| |||||| ||||||  |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  20118902 tcctaatcatacgccgaataacctagagacggttatgccataagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacaatactttccaca 20119001  T
Q  201 acacttcttagactttctctttcagttcc 229  Q
    | | |||| | |||||| || ||||||||    
T  20119002 atatttctaacactttcactctcagttcc 20119030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20122604 - 20122821
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    ||||||| || ||||||| | |||  |||||| | ||| | |||||| ||||  ||||||||| | |||| |||||||  ||||| ||||||||  | ||    
T  20122604 ttaaggctacgcactcaaagtagcgtgccaacatgcctccaccgtgccacaccagagcacgccccattgtcgggatcacactacatgtgtccttcccggc 20122703  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    || | |||| |||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  20122704 tcttaatcatacgccgcataacccggagacggttattccataagcgcgcctatataagggtgaactttcttcaccctcaaggtacacaacactttccaca 20122803  T
Q  201 acacttcttagactttct 218  Q
    | ||||| || |||||||    
T  20122804 aaacttcatacactttct 20122821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 17396968 - 17396796
Alignment:
Q  22 agcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataa 121  Q
    |||| ||||||| |||||| |||||| ||||   ||||||||||||||  |||||||  ||||| ||||||||  |||||||| |||| |||||||||||    
T  17396968 agcatgccaactcacctgcaccgtgccacaccaaagcacgcctccttgccgggatcacactacatgtgtccttccccgctcctaatcatacgccgcataa 17396869  T
Q  122 cccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 194  Q
    |||| | | ||||| |||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  17396868 cccgaaaatggttacgccacgagtgcgtctatataagggtgaacatgcttcaccctcaaggtacacaacactt 17396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 14860029 - 14860133
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||| ||||| ||||||| ||||||||||||| |   ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14860029 atcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacact 14860128  T
Q  206 tctta 210  Q
    |||||    
T  14860129 tctta 14860133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 12731491 - 12731618
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||||||||| |||| |||||| |  | || | | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  12731491 atcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacact 12731590  T
Q  206 tcttagactttctctttcagttccatta 233  Q
    ||||| ||  ||| | ||||||||||||    
T  12731591 tcttatacactctttctcagttccatta 12731618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 25496122 - 25495995
Alignment:
Q  83 acacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaagg 182  Q
    |||||||||||   ||| |||| ||||||||||||||||||||||||||||||||      | |||| ||||||||||||||||||||||||| | ||||    
T  25496122 acacgtgtcctacaccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgcttcacctttaagg 25496023  T
Q  183 tacacaacacttttcacaacacttctta 210  Q
    |||||| |||||||  |||| |||||||    
T  25496022 tacacatcacttttttcaactcttctta 25495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 12516371 - 12516219
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctca 179  Q
    |||||||||||||  ||||  ||| |||||| | |||||||  |||||||||||||| ||| | || | | ||||||| |||||||||||||||||||||    
T  12516371 ctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaag-gcacacctatataaaggtgaacttgcttcaccctca 12516273  T
Q  180 aggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||| | ||||||||||||||||| ||| ||  ||| | ||||||||||||    
T  12516272 aggtacatatcacttttcacaacacttattacacaatctttctcagttccatta 12516219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 12108580 - 12108500
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca 186  Q
    |||||| |||||||||||||||| | |||||| |    ||| || ||||||||||||||||||||||||||||||||||||    
T  12108580 atcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtaca 12108500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 20622594 - 20622491
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    |||||||||||||||  |||| || |||||||| | ||||||||  |||||||||||||     |  || ||||||||||||||||||||||||||||||    
T  20622594 ctacacgtgtcctttatcgcttctaatcacacgtcacataacccaaagacggttatgcccaacacatgcatatataagggtgaacttgcttcaccctcaa 20622495  T
Q  181 ggta 184  Q
    ||||    
T  20622494 ggta 20622491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 16704525 - 16704463
Alignment:
Q  144 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    |||||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  16704525 gcgcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 16704463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 7835482 - 7835535
Alignment:
Q  84 cacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg 137  Q
    ||||||||||  |||| ||||||||||||| |||||||||| ||||||||||||    
T  7835482 cacgtgtcctcctccgttcctgatcacacgtcgcataacccagagacggttatg 7835535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 1770987 - 1770886
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacga-gcgcgcttatataagggtgaacttgcttcaccctcaaggtaca-caacacttttcacaaca 203  Q
    |||| |||||||||||  ||||||||||||||| || | |||| | |||||||||| |||||||||||| ||||||||  ||  | ||||||||||||||    
T  1770987 atcatacgccgcataattcggagacggttatgc-acaacgcgcacctatataagggcgaacttgcttcatcctcaaggcgcatgatcacttttcacaaca 1770889  T
Q  204 ctt 206  Q
    |||    
T  1770888 ctt 1770886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 30607051 - 30606989
Alignment:
Q  144 gcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    |||||| ||||||||||||  ||| |||||||||||||||| |   |||||||||||||||||    
T  30607051 gcgcgcctatataagggtggccttacttcaccctcaaggtataattcacttttcacaacactt 30606989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 431285 - 431346
Alignment:
Q  145 cgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    ||||| |||||||||||| || |||||||||||||||| |||   ||||||||||| |||||    
T  431285 cgcgcctatataagggtggacatgcttcaccctcaagggacaattcacttttcacagcactt 431346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 215527 - 215306
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    ||||||| ||||||||||| ||| | ||| ||||||  ||| | ||||| |||||| || ||||||    |||||||||||||  |||||||| ||||||    
T  215527 cactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagcacacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcaca 215428  T
Q  112 cgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    ||||||||||||||||||| ||||||  ||  | | ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  215427 cgccgcataacccggagacagttatgatcaaca-cacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttctta 215329  T
Q  211 gactttctctttcagttccatta 233  Q
     ||  |||||||||||| |||||    
T  215328 cacactctctttcagtttcatta 215306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 42514 - 42283
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgc 100  Q
    |||||||  ||||||||| ||| ||||| ||||  |||| | ||||| ||||||||| |||||||| ||    ||| | |||||||||||||  |    |    
T  42514 ttaaggcttcacactcaaaggaacacgctaactcgcctgtgtcgtgccacactggagtacgcctccctgccatgattacgctacacgtgtccgctctaac 42415  T
Q  101 tcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 200  Q
    |||| |||| || ||||||||| | ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42414 tcctaatcatacaccgcataactcagagacggttatgccaagagcgggcctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcaca 42315  T
Q  201 acacttcttagactttctctttcagttccatta 233  Q
    |||||| | | ||||| ||| ||||||||||||    
T  42314 acacttataatacttt-tctatcagttccatta 42283  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 18799948 - 18799844
Alignment:
Q  98 cgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttc 197  Q
    ||||||| |||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  18799948 cgctcctaatcacacgccacataacccagagacggttatgcctcgagcgcgcctatataagggtgaacttgcttcatcatcaaggtacacaacacttttc 18799849  T
Q  198 acaac 202  Q
    |||||    
T  18799848 acaac 18799844  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 18804174 - 18803982
Alignment:
Q  10 cacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatca 109  Q
    ||||||||||||||||||||||||  || | ||||||| ||||||||||||||||||||||  |||||| | |||| ||||||  | |||||||| ||||    
T  18804174 cacactcaagggagcacgccaactcgcccgtgccgtgccacactggagcacgcctccttgtcaggatcacgttacatgtgtccactcccgctcctaatca 18804075  T
Q  110 cacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaac 202  Q
    |||| || ||||| | |||| |  | |||||| | | ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  18804074 cacgtcgtataactcagagatgaatctgccacaaacacgcctatatacgggtgaaattgcttcaccctcaaggtacacaacaattttcacaac 18803982  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 21213438 - 21213306
Alignment:
Q  72 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 171  Q
    ||||||| |||||||||||||  |||||||||| |||   ||||| |||||| |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  21213438 gggatcacgctacacgtgtccacttccgctcctaatcgttcgccgtataaccaggagacggttataccaagagcgcgcctatataagggtgaacttgctt 21213339  T
Q  172 caccctcaaggtacacaacacttttcacaacac 204  Q
    |||||||||| ||||||||||||||||| ||||    
T  21213338 caccctcaagctacacaacacttttcactacac 21213306  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 25679142 - 25679272
Alignment:
Q  72 gggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgctt 171  Q
    ||||||| |||| ||||||||  | | |||||| |||| || |||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||    
T  25679142 gggatcacgctaaacgtgtccactcctgctcctaatcatactccgcataacccgaagacggttatgccaagagcgcacctatataagggtgaacttgctt 25679241  T
Q  172 caccctcaaggtacacaacacttttcacaac 202  Q
    |||||||||| || |||||||||||||||||    
T  25679242 caccctcaagctagacaacacttttcacaac 25679272  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 26347953 - 26348109
Alignment:
Q  38 tgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatg 137  Q
    |||| ||||| |||| |||||||||||||| | |||||||| || |||||||| |||  ||||| || |||||||| ||||||||||||||||| |||||    
T  26347953 tgcgtcgtgccacacaggagcacgcctcctcgctgggatcacgcaacacgtgttcttccccgcttctaatcacacgtcgcataacccggagacgtttatg 26348052  T
Q  138 ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactt 194  Q
      |     |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26348053 gaaaacatgcgcctatataagggtgaacttgcttcaccctcaaggtacacaacactt 26348109  T

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Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 24546597 - 24546399
Alignment:
Q  12 cactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    |||| |||||||||||||||||| | ||| |||||| |||| ||||| | |||||  |   ||||||  ||||||||||| |  ||||  ||| ||||||    
T  24546597 cacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccctaatcaca 24546498  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaac-ttgcttcaccctcaaggtacacaacacttttcacaacacttctta 210  Q
    |||||||||||||||||||||||||| |    |||||| ||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24546497 cgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtacacatcac-tttcacaacacttctta 24546399  T

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Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 25828893 - 25829022
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttat-gccacgagcgcgcttatataagggtgaacttgcttcaccctca 179  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||| ||||  | |||  ||||||| ||||||||||| ||||||||||    
T  25828893 ctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacggctatggccaaca-cgcttttatatacgggtgaacttgtttcaccctca 25828991  T
Q  180 aggtacacaacacttttcacaacacttctta 210  Q
    ||| ||||| |||||||||||| ||||||||    
T  25828992 agggacacatcacttttcacaatacttctta 25829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 24647412 - 24647322
Alignment:
Q  143 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||  ||| ||||||||||||||    
T  24647412 agcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccatta 24647322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 22865947 - 22865818
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    ||||||||||| |  ||||  ||| |||||| | ||||||| ||||| ||||||||| |    || ||| ||||||||||||||||||||||||||||||    
T  22865947 ctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctcaa 22865848  T
Q  181 ggtacacaacacttttcacaacacttctta 210  Q
    |||||||| |||||||||||||| ||||||    
T  22865847 ggtacacatcacttttcacaacatttctta 22865818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 25537566 - 25537439
Alignment:
Q  106 atcacacgccgcataacccggagacggttatg-ccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacac 204  Q
    |||||||| | ||||||| |||||||||| || ||| | |||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  25537566 atcacacgtcacataacctggagacggttttggccaag-gcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacac 25537468  T
Q  205 ttcttagactttctctttcagttccatta 233  Q
    ||| || ||  ||| | ||||||||||||    
T  25537467 ttcatacacaatctttctcagttccatta 25537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 31202280 - 31202407
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    ||||||||||| |  ||| | ||| ||||||||||||||||||  |||||||||||| |    | |||| ||||||||||||||||||||||||||||||    
T  31202280 ctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatataagggtgaacttgcttcaccctcaa 31202379  T
Q  181 ggtaca-caacacttttcacaacacttc 207  Q
    ||||||  | |||||| |||||||||||    
T  31202380 ggtacattatcactttccacaacacttc 31202407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 26994574 - 26994614
Alignment:
Q  144 gcgcgcttatataagggtgaacttgcttcaccctcaaggta 184  Q
    |||||| ||||||||||||| |||||||||||| |||||||    
T  26994574 gcgcgcctatataagggtgaccttgcttcacccccaaggta 26994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 53152 - 53329
Alignment:
Q  55 gagcacgcctccttgttgggatcaggctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttata 154  Q
    |||||| ||||||||  | ||||| ||||||  |||||  | |||||||| |||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  53152 gagcacacctccttgccgagatcacgctacatttgtccactcccgctcctaatcaaacaccgcataacctagagacggttatgccacgagcgcgcctata 53251  T
Q  155 taagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||||||||||||||| ||||  |||||||||||||||| ||||| || || || |||| ||| ||||||||||||    
T  53252 taagggtgaacttgcttcaacctctgggtacacaacacttttaacaactctcctaagccttt-tctctcagttccatta 53329  T

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Target: scaffold0543 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 4784 - 4970
Alignment:
Q  15 tcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttg---ggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    |||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||   || ||| |||||||||||||  | ||||| || ||||||    
T  4784 tcaaaggagcacgccaacatgcctgcgccgtgccacattggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcaca 4883  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 198  Q
     |||||||||  |||||||  ||||||||| ||||  | |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  4884 tgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcctcatggtacacaacacttttca 4970  T

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Target: scaffold0492 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 6330 - 6516
Alignment:
Q  15 tcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttg---ggatcaggctacacgtgtccttttccgctcctgatcaca 111  Q
    |||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||   || ||| |||||||||||||  | ||||| || ||||||    
T  6330 tcaaaggagcacgccaacatgcctgcgccgtgccacattggagcacacctccttgttgccgggttcacgctacacgtgtccactcccgcttctaatcaca 6429  T
Q  112 cgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 198  Q
     |||||||||  |||||||  ||||||||| ||||  | |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  6430 tgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcctcatggtacacaacacttttca 6516  T

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Target: scaffold0380 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 6790 - 6894
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||||||| ||||||||||||| |    | |||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6790 atcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacact 6889  T
Q  206 tctta 210  Q
    |||||    
T  6890 tctta 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 10890 - 10972
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||||    
T  10890 tatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccatta 10972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 23072 - 22943
Alignment:
Q  81 ctacacgtgtccttttccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaa 180  Q
    |||||| ||||||  ||||  ||| ||||||| |||||||||| ||||| ||||||  |    |||| | || |||||||||||||||||||||||||||    
T  23072 ctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctcaa 22973  T
Q  181 ggtacacaacacttttcacaacacttctta 210  Q
    |||||||  |||||||||||||||||||||    
T  22972 ggtacacgtcacttttcacaacacttctta 22943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 4399 - 4481
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||| |||||||||||| |||||    
T  4399 tatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcatta 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4278 - 4371
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtcctt 94  Q
    ||||||| |||||||||||||||||||||||||||||| |  ||||| |||| |||||||||||||||| |||||||| ||||||||| |||||    
T  4278 ttaaggctacacactcaagggagcacgccaacttacctacatcgtgccacacaggagcacgcctccttgctgggatcacgctacacgtttcctt 4371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 379837 - 379750
Alignment:
Q  146 gcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttagactttctctttcagttccatta 233  Q
    |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  ||| | ||||||||||||    
T  379837 gcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccatta 379750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 120978 - 121041
Alignment:
Q  143 agcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  120978 agcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactt 121041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 5199 - 5095
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||||| ||| |||||||||||    | || | | ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  5199 atcacacgccgcataagccgaagacggttatgatcagcgcacacctatataagggtgaacttgcttcaccctcaaggttcacgtcacttttcacaacact 5100  T
Q  206 tctta 210  Q
    |||||    
T  5099 tctta 5095  T

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Target: scaffold0092 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21443 - 21669
Alignment:
Q  1 ttaaggccacacactcaagggagcacgccaacttacctgcgccgtgcaacactggagcacgcctccttgttgggatcaggctacacgtgtc-cttttccg 99  Q
    ||||||| ||||||| |||||||||||||||||| | |||  ||||| ||||  ||||||||||||| |  ||||||| |||||||||||| |    | |    
T  21443 ttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctacacgtgtcacgcaactg 21542  T
Q  100 ctcctgatcacacgccgcataacccggagacggttatgc-cacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttca 198  Q
    | ||| ||||||||| | ||  | | ||||||||||| | || | |||||  ||| |||||||||| ||||||||||||||||||||||| |||||| ||    
T  21543 c-cctaatcacacgctggatctcacagagacggttatactcaag-gcgcgtctatgtaagggtgaatttgcttcaccctcaaggtacacatcactttcca 21640  T
Q  199 caacacttcttagactttctctttcagtt 227  Q
    |||||||||||| ||  ||||||||||||    
T  21641 caacacttcttaaacactctctttcagtt 21669  T

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Target: scaffold0464 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 11673 - 11574
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacact 205  Q
    |||||||||||||||||||| |||| |||||| |  | || | | |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  11673 atcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaacttggttcaccctcaaggt-cacatcacttttcacaacact 11575  T

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Target: scaffold0294 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 172 - 300
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtaca-caacacttttcacaacac 204  Q
    ||||||| | ||||||||||||||| |||||| |    |||||| || |||||||||||||||||||||||||||||||||    |||||||||||||||    
T  172 atcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacac 271  T
Q  205 ttcttagactttctctttcagttccatta 233  Q
    |||||| ||  ||| | ||||||||||||    
T  272 ttcttacacactctttctcagttccatta 300  T

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Target: scaffold0518 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 9144 - 9031
Alignment:
Q  97 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 196  Q
    |||||||| |||| | | |||||||||  |||||||||||| |    ||| || ||||||||||||||| | || |||||||||||||||||  | ||||    
T  9144 ccgctcctaatcatatgtcgcataacctagagacggttatgaccaacgcgggcctatataagggtgaaccttctccaccctcaaggtacacataattttt 9045  T
Q  197 cacaacacttctta 210  Q
    ||||||||||||||    
T  9044 cacaacacttctta 9031  T

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Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 6468 - 6359
Alignment:
Q  97 ccgctcctgatcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacactttt 196  Q
    |||||||| ||||||| || | |||||||||||||||||||      | |||| ||||||||| |||||||||||||| ||||||||||    |||||||    
T  6468 ccgctcctaatcacacaccacgtaacccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcactttt 6369  T
Q  197 cacaacactt 206  Q
    ||||||||||    
T  6368 cacaacactt 6359  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 15405 - 15460
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactt 206  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  15405 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactt 15460  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 14038 - 14005
Alignment:
Q  151 tatataagggtgaacttgcttcaccctcaaggta 184  Q
    ||||||||||||| ||||||||||||||||||||    
T  14038 tatataagggtgatcttgcttcaccctcaaggta 14005  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 20427 - 20524
Alignment:
Q  106 atcacacgccgcataacccggagacggttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaaca 203  Q
    |||||||||  |||||| ||||||||| |||| |    |||||| |||||| ||||||| ||  ||||||| ||||||||||| ||||||||| ||||    
T  20427 atcacacgctacataactcggagacggctatgaccaacgcgcgcctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataaca 20524  T

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