View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_low_4 (Length: 541)

Name: NF20902_low_4
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_low_4
NF20902_low_4
[»] chr3 (3 HSPs)
chr3 (11-522)||(28397465-28397980)
chr3 (413-524)||(55244105-55244216)
chr3 (443-522)||(36868660-36868739)
[»] chr4 (4 HSPs)
chr4 (413-513)||(10775790-10775890)
chr4 (172-262)||(40458356-40458446)
chr4 (112-237)||(68778-68902)
chr4 (474-510)||(20917787-20917823)
[»] chr1 (6 HSPs)
chr1 (116-262)||(37667798-37667947)
chr1 (172-262)||(43408466-43408556)
chr1 (112-237)||(337539-337663)
chr1 (424-514)||(7921740-7921830)
chr1 (474-515)||(12262110-12262151)
chr1 (425-510)||(37463247-37463332)
[»] chr2 (2 HSPs)
chr2 (428-514)||(7292801-7292887)
chr2 (112-237)||(40446912-40447036)
[»] chr7 (4 HSPs)
chr7 (112-237)||(22077134-22077258)
chr7 (427-524)||(47235555-47235652)
chr7 (422-510)||(24425898-24425986)
chr7 (413-470)||(42177383-42177440)
[»] chr8 (3 HSPs)
chr8 (430-513)||(5908456-5908539)
chr8 (413-510)||(38328175-38328272)
chr8 (430-514)||(6986635-6986719)
[»] chr5 (1 HSPs)
chr5 (474-524)||(1525445-1525495)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Original strand, 28397465 - 28397980
Alignment:
Q  11 cacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaa---------atgtgaatcatggagatgtgt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  28397465 cacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaaatgtggaaaatgtgaatcatggagatgtgt 28397564  T
Q  102 atgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  28397565 atgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatagagggagtttgttttcaagatttggctaa 28397664  T
Q  202 ttatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaatcaatgaattagaatatattaattgatgttcataatgca 301  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  28397665 ttatattgatgggagaatgtaatttcaatgtgtaacagagtcaacttatgaattcatggaatcaatgaattagaatat----attgatgttcataatgca 28397760  T
Q  302 ctcatagttcaatgtatgtgagagaagaaatgcagggtatggcttcagcttgggctattgaaaatggggatatatttaccatgactcgtatttaaggaag 401  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  28397761 ctcatagttcaatgtgtgtgagagaagaaatgcagggtatggcttcagcttgggc-aatgaaaatggggatatatttaccatgactcgtatttaaggaag 28397859  T
Q  402 aacatcgacatcttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcc 501  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397860 gacatcgacatcttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcc 28397959  T
Q  502 cttcaacttgagcgatacttt 522  Q
    |||||||||||||||||||||    
T  28397960 cttcaacttgagcgatacttt 28397980  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 524
Target Start/End: Complemental strand, 55244216 - 55244105
Alignment:
Q  413 cttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttga 512  Q
    |||||||||| ||  ||||||||||| ||  ||||||||||||||  || ||||||| |  ||||||| | ||||  |||||||||||||||||||||||    
T  55244216 cttaatttattttcatgttggttcttgacagtccaacactttgtccgatacaacattgtcggtcttacagctgtcagataaaattttcccttcaacttga 55244117  T
Q  513 gcgatacttttg 524  Q
    | | ||||||||    
T  55244116 gtggtacttttg 55244105  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 36868660 - 36868739
Alignment:
Q  443 atccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgagcgatacttt 522  Q
    ||||||||||||||| ||| ||||||||  ||||||||  |||||| ||||| |||||||||||| ||| | ||||||||    
T  36868660 atccaacactttgtcccattcaacatttgcagtcttacaattgtccgataaatttttcccttcaaattgggtgatacttt 36868739  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 513
Target Start/End: Original strand, 10775790 - 10775890
Alignment:
Q  413 cttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttga 512  Q
    |||||||||| ||||  || ||||||||||  |||||||| | || ||| ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  10775790 cttaatttatttttgcattagttctttaccgcccaacactctttcccatacaacatcattggtcttaccgttgtccaataaaattttcccttcaacttga 10775889  T
Q  513 g 513  Q
    |    
T  10775890 g 10775890  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 40458446 - 40458356
Alignment:
Q  172 ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa 262  Q
    |||||||||| ||||||||||||||| ||||| ||||||||  |||  || |||| |||||||||| |||  |||| ||||||||| ||||    
T  40458446 ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa 40458356  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 68902 - 68778
Alignment:
Q  112 taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat 211  Q
    |||||| |||||||||||||||| || ||||  | | ||||||| ||  ||| |||||  ||| ||||||||  |||| | ||||||||||||||||| |    
T  68902 taggaagtaataagagaatattgcgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt 68804  T
Q  212 gggagaatgtaatttcaatgtgtaac 237  Q
    || ||||  | |||||||||||||||    
T  68803 ggaagaaactgatttcaatgtgtaac 68778  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 510
Target Start/End: Complemental strand, 20917823 - 20917787
Alignment:
Q  474 gtcttaccgttgtccaataaaattttcccttcaactt 510  Q
    ||||||||||||| | |||||||||||||||||||||    
T  20917823 gtcttaccgttgttcgataaaattttcccttcaactt 20917787  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 37667798 - 37667947
Alignment:
Q  116 aaataataagagaatattgtgatagggg----gatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat 211  Q
    |||||||| ||||| ||||||||| |||    ||| ||||||||| |  |||||||| | |||||||||||||||||||||||||| ||||| |||||||    
T  37667798 aaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggata-ggagggagtttgttttcttgatttggataattgtattgat 37667896  T
Q  212 gggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa 262  Q
    |  |||  || |||| |||||||||| |||  |||| ||||||||| ||||    
T  37667897 gtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa 37667947  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 43408466 - 43408556
Alignment:
Q  172 ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa 262  Q
    |||||||||| ||||||||||||||| ||||| ||||||||  |||  || |||| |||||||||| |||  |||| ||||||||| ||||    
T  43408466 ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa 43408556  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 337663 - 337539
Alignment:
Q  112 taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat 211  Q
    |||||| ||||||||||||| ||||| ||||  ||| ||||||| ||| | | |||||  ||| ||||||||  |||| | ||||||||||||||||| |    
T  337663 taggaagtaataagagaatactgtgagaggga-ataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt 337565  T
Q  212 gggagaatgtaatttcaatgtgtaac 237  Q
    || ||||  | |||||||||||||||    
T  337564 ggaagaaactgatttcaatgtgtaac 337539  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 7921830 - 7921740
Alignment:
Q  424 tttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgagc 514  Q
    ||||||| |||||||||| | ||||||||||||  ||| ||||||| |  ||||||  | ||| ||  |||||||||||||||||||||||    
T  7921830 tttgtgtcggttctttacaacccaacactttgtaccatacaacattgtcggtcttatagatgttcaggaaaattttcccttcaacttgagc 7921740  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 515
Target Start/End: Original strand, 12262110 - 12262151
Alignment:
Q  474 gtcttaccgttgtccaataaaattttcccttcaacttgagcg 515  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  12262110 gtcttaccattgtcaaataaaattttcccttcaacttaagcg 12262151  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 510
Target Start/End: Original strand, 37463247 - 37463332
Alignment:
Q  425 ttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaactt 510  Q
    |||||||||||||| |||| |||||||| |||  ||| |||||||  |||||| || ||||||  ||| |||||||| ||||||||    
T  37463247 ttgtgttggttcttaaccacccaacactctgtaccatacaacattgctagtctgactgttgtctgatagaattttcctttcaactt 37463332  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 514
Target Start/End: Complemental strand, 7292887 - 7292801
Alignment:
Q  428 tgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgagc 514  Q
    ||||||||||| |||| ||||||| ||||| | | ||||||| |  ||||||||||||||  || |||||||| |||||||||||||    
T  7292887 tgttggttcttcaccacccaacaccttgtcccgtacaacattgtcggtcttaccgttgtcatatgaaattttctcttcaacttgagc 7292801  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 40447036 - 40446912
Alignment:
Q  112 taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat 211  Q
    |||||| ||||||||||||| ||||| ||||  | | ||||||| ||| | | |||||  ||| ||||||||  |||| | ||||||||||||||||| |    
T  40447036 taggaagtaataagagaatactgtgagaggga-acaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt 40446938  T
Q  212 gggagaatgtaatttcaatgtgtaac 237  Q
    || ||||  | |||||||||||||||    
T  40446937 ggaagaaactgatttcaatgtgtaac 40446912  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 22077258 - 22077134
Alignment:
Q  112 taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat 211  Q
    |||||| ||||||||||||||||||| ||||  | | ||||||| ||  ||| |||||  ||| ||||||||  |||| | ||||||||||||||||| |    
T  22077258 taggaagtaataagagaatattgtgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt 22077160  T
Q  212 gggagaatgtaatttcaatgtgtaac 237  Q
    || ||||  | |||||||||||||||    
T  22077159 ggaagaaactgatttcaatgtgtaac 22077134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 524
Target Start/End: Complemental strand, 47235652 - 47235555
Alignment:
Q  427 gtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgagcgatacttttg 524  Q
    ||||||||||||||||   |||||||  ||||||| || |||| | ||||| |   ||||||||||||||||| |||||||||| |||| ||||||||    
T  47235652 gtgttggttctttaccgctcaacactccgtctcatacagcattgtcagtctgataattgtccaataaaattttaccttcaacttaagcggtacttttg 47235555  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 24425898 - 24425986
Alignment:
Q  422 tatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaactt 510  Q
    |||||||||||||| || ||||  ||||| ||||| |||| ||||||  |  |||| || ||||||||||| |||||||||||||||||    
T  24425898 tatttgtgttggttattaaccactcaacattttgtttcatacaacatcatcggtctaacagttgtccaatagaattttcccttcaactt 24425986  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 42177383 - 42177440
Alignment:
Q  413 cttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacattt 470  Q
    |||||||||| || |||||||| ||||||  |||||||||||||| ||| ||||||||    
T  42177383 cttaatttattttcgtgttggtcctttacagtccaacactttgtcccatacaacattt 42177440  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 5908539 - 5908456
Alignment:
Q  430 ttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgag 513  Q
    ||||||||||||||  ||||||| | |  ||| |||||||  ||||| ||| ||| ||||||||| ||||||||||||||||||    
T  5908539 ttggttctttaccagtcaacactcttttccatacaacattgctagtcatacagttatccaataaatttttcccttcaacttgag 5908456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 510
Target Start/End: Original strand, 38328175 - 38328272
Alignment:
Q  413 cttaatttatatttgtgttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaactt 510  Q
    |||| ||||| ||||||||||||||||||   ||||| || | |||| | || |||| || ||||||| ||||| | ||||| |||||||||||||||    
T  38328175 cttactttatgtttgtgttggttctttactgcccaactctctatctcgtacaccattgttggtcttactgttgttcgataaatttttcccttcaactt 38328272  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 6986719 - 6986635
Alignment:
Q  430 ttggttctttaccatccaacactttgtctcatgcaacatttttagtcttaccgttgtccaataaaattttcccttcaacttgagc 514  Q
    ||||||||| ||| || ||||||||||  ||| ||||||| || ||||||||| || |  | |||||||||||| ||||||||||    
T  6986719 ttggttcttcaccgtctaacactttgttccatacaacattgttggtcttaccgctggctgacaaaattttccctccaacttgagc 6986635  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 1525495 - 1525445
Alignment:
Q  474 gtcttaccgttgtccaataaaattttcccttcaacttgagcgatacttttg 524  Q
    ||||||||||||| | |||||| |||||||||||||| |||| ||||||||    
T  1525495 gtcttaccgttgttcgataaaaatttcccttcaacttaagcggtacttttg 1525445  T

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