View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20902_low_7 (Length: 429)

Name: NF20902_low_7
Description: NF20902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20902_low_7
NF20902_low_7
[»] chr8 (3 HSPs)
chr8 (2-410)||(9935739-9936148)
chr8 (110-180)||(8273410-8273480)
chr8 (119-198)||(37270294-37270373)
[»] chr7 (1 HSPs)
chr7 (3-411)||(42460434-42460850)
[»] chr4 (2 HSPs)
chr4 (231-407)||(50436536-50436713)
chr4 (2-398)||(2281596-2281994)
[»] chr2 (2 HSPs)
chr2 (2-270)||(1479779-1480049)
chr2 (136-180)||(40920770-40920814)
[»] chr6 (2 HSPs)
chr6 (113-200)||(1033851-1033938)
chr6 (119-180)||(2921387-2921448)
[»] chr5 (1 HSPs)
chr5 (99-198)||(36988583-36988682)
[»] chr1 (1 HSPs)
chr1 (108-197)||(4641205-4641294)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 410
Target Start/End: Complemental strand, 9936148 - 9935739
Alignment:
Q  2 catcacaatgcaagaagagatgggtagaagtctcaacacaccttccacataaaacaaaaagtaaggacac--ccagatccaagatatgtcgagatgcacg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||  ||  ||||||| |||||||||||||| |    
T  9936148 catcacaatgcaagaagagatgggtagaagtctcaacacaccttccacacaaa-cacaaagtaaggacacacccgaatccaaggtatgtcgagatgcaag 9936050  T
Q  100 attatccttcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctca 199  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9936049 attatccttcgtaggaatacgatcaagaagtagggaccaatagaatgtgactactttggaaggagccggactcttccaaatcgaggagaaaaccccctca 9935950  T
Q  200 taaatagcactcacatcgtctaccacaaggaagagattttccaaaatgaaataagttgatttggccgaaaaagaaccgtcctcctccggagtccacaccc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  9935949 taaatagcactcacatcgtctaccacaaggaagagattttccaaaatggaataagttggtttgaccgaaaaagaaccgtcctcctccggagtccacaccc 9935850  T
Q  300 acttatcttcctcacctccaaaagctacctcctccaataaaacgattaaattatggataagttcaggctcccactaaaacggatccctccgccacataat 399  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  9935849 acttatcttcctcgcctccaaaagctacctcctccaacaaaaccatcaaattatggataagttcaagctcccacaaaaacggatccctccgccacgtaat 9935750  T
Q  400 attccactcac 410  Q
    |||||||||||    
T  9935749 attccactcac 9935739  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 8273480 - 8273410
Alignment:
Q  110 gtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaat 180  Q
    ||||||||||||||||| ||||  |||||| ||||||| || |||||||| |||||||| |||||||||||    
T  8273480 gtaggaatacgatcaaggagtaaagaccaaaagaatgccaccactttggacggagccgggctcttccaaat 8273410  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 37270294 - 37270373
Alignment:
Q  119 cgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctc 198  Q
    |||||||||||||  | ||| |||||||| || |||||||| |||||||||||| ||||||  || |||||||| |||||    
T  37270294 cgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaactccctc 37270373  T

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Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 42460434 - 42460850
Alignment:
Q  3 atcacaatgcaagaagagatgggtagaagtctcaacacaccttccacataaaacaaaaagtaaggac--acccagatccaagatatgtcgagatgcacga 100  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||  || |  |||||| || || ||| ||||  ||    
T  42460434 atcacaatgcaaaaagaggtgggtagaagtctcaacacacattccacacaaaacacaaagtaaggacgcactcgaatccaaaatgtgacgaaatgcgaga 42460533  T
Q  101 ttatccttcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctcat 200  Q
    ||||||||||||||||| | |||||| ||||  | ||||||||| |  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  42460534 ttatccttcgtaggaatgcaatcaaggagtagtgcccaagagaacgtcactactttggaaggagccggactcttccaaatcgaggagaacaccccctcat 42460633  T
Q  201 aaatagcactcacatcgtctaccacaaggaagagattttccaaaatgaaataagttgatttggccgaaaaagaaccgtcctcctccggagtccacaccca 300  Q
    | ||||||||||| |||||||  ||||| ||  ||||||||||||||  ||||||||||||| |||||||    || |  ||||||||| ||||||||||    
T  42460634 acatagcactcacctcgtctattacaagaaattgattttccaaaatgggataagttgatttgaccgaaaacacgccattatcctccggattccacaccca 42460733  T
Q  301 cttatcttcctcacctccaaaagctacctcctccaataaaacga------ttaaattatggataagttcaggctcccactaaaacggatccctccgccac 394  Q
    |||||||||||||||||||||| |||||||| || | ||||  |      | | |||||||||||| ||| |||||||| | ||||||||||||||||||    
T  42460734 cttatcttcctcacctccaaaatctacctccgccgacaaaatcaaaatcttcatattatggataagatcaagctcccacaagaacggatccctccgccac 42460833  T
Q  395 ataatattccactcacg 411  Q
     ||||||||||| ||||    
T  42460834 gtaatattccacacacg 42460850  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 50436713 - 50436536
Alignment:
Q  231 agagattttccaaaatgaaataagttgatttggccgaaaaagaa-ccgtcctcctccggagtccacacccacttatcttcctcacctccaaaagctacct 329  Q
    ||||||||||||||||| |||| ||||||||| |||||||| || || ||||||||||| | ||| | |||||||||||||||||| ||||| |||||||    
T  50436713 agagattttccaaaatggaataggttgatttgaccgaaaaataaaccatcctcctccggtgcccaaaaccacttatcttcctcaccaccaaacgctacct 50436614  T
Q  330 cctccaataaaacgattaaattatggataagttcaggctcccactaaaacggatccctccgccacataatattccact 407  Q
    ||||||| ||||| || |||||||| || | |||| |||||||| |||| ||||||||| ||||  ||||||||||||    
T  50436613 cctccaacaaaaccatcaaattatgaattaattcaagctcccacaaaaatggatccctctgccaagtaatattccact 50436536  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 2281994 - 2281596
Alignment:
Q  2 catcacaatgcaagaagagatgggtagaagtctcaacacaccttccacataaaacaaaaagtaagga--cacccagatccaagatatgtcgagatgcacg 99  Q
    |||||||||| || ||||| || ||||  |||||  ||| ||||||||| ||| || |||| |||||  | |||||||| |  ||||| ||  ||||| |    
T  2281994 catcacaatgtaaaaagaggtgagtaggcgtctcggcactccttccacacaaagcacaaagcaaggaagctcccagatcgagtatatgacggaatgcaag 2281895  T
Q  100 attatccttcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctca 199  Q
    ||||||| | || ||||||||  |||| || |  |||||||||||  | ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  2281894 attatcccttgttggaatacgcccaaggagaagagaccaagagaacaccactactttggatggagtcggactcttccaaagcaaggagaaaaccccctca 2281795  T
Q  200 taaatagcactcacatcgtctaccacaaggaagagattttccaaaatgaaataagttgatttggccgaaaaagaaccgtcctcctccggagtccacaccc 299  Q
    |   | |||| |||||| | | ||| |||||| | ||||||||||||||||||||| |||||| |||||||    || |||||||||||| |||| ||||    
T  2281794 ttggtcgcacccacatcattttccagaaggaaaatattttccaaaatgaaataagtagatttgaccgaaaatatgccttcctcctccggaatccaaaccc 2281695  T
Q  300 acttatcttcctcacctccaaaagctacctcctccaataaaacgattaaattatggataagttcaggctcccactaaaacggatccctccgccacataa 398  Q
    ||||||| ||||| || ||| |||| ||  ||||||| ||| | || ||||| | |||||| | | |||||||   |||||| | ||||| ||||||||    
T  2281694 acttatcctcctccccaccagaagcaactccctccaacaaagccatcaaattgttgataagattaagctcccatataaacggttgcctcctccacataa 2281596  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 1479779 - 1480049
Alignment:
Q  2 catcacaatgcaagaagagatgggtagaagtctcaacacaccttccacataaaacaaaaagtaagga--cacccagatccaagatatgtcgagatgcacg 99  Q
    |||||||||| ||||| ||||| ||||| ||||||||   ||| ||||| |||||| ||||||||||  ||||| | || | |||||| |||   ||  |    
T  1479779 catcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggatgcacccgggtcaaggatatggcgaatggctag 1479878  T
Q  100 attatccttcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctca 199  Q
    | | | | |||||||||| |||||||| | ||   |||||||||| || ||||||||||||||||||| ||||||||||| ||| || ||||  ||||||    
T  1479879 acttttcctcgtaggaatgcgatcaagtaataacaaccaagagaaggccactactttggaaggagccgaactcttccaaagcaaagaaaaaaaaccctca 1479978  T
Q  200 taaatagcactcacatcgtctaccacaaggaagagattttccaaaatgaaataagttgatttggccgaaaa 270  Q
    | |||| | | |||||| ||| | || ||||||| ||||||||| ||| ||||||  |||||| |||||||    
T  1479979 ttaatatctcccacatcttcttcgacgaggaagatattttccaacatggaataagcagatttgaccgaaaa 1480049  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 40920814 - 40920770
Alignment:
Q  136 ccaagagaatgcgactactttggaaggagccggactcttccaaat 180  Q
    |||||||||||| || ||||| ||||||||||||||| |||||||    
T  40920814 ccaagagaatgccacaacttttgaaggagccggactcctccaaat 40920770  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 1033938 - 1033851
Alignment:
Q  113 ggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctcat 200  Q
    |||||||||||||| || | |||||||||||| || || ||||||||||||||||||||||||||||    ||| |||||||||||||    
T  1033938 ggaatacgatcaaggagcaaggaccaagagaacgccacaactttggaaggagccggactcttccaaagtgcggaaaaaaccccctcat 1033851  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 2921387 - 2921448
Alignment:
Q  119 cgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaat 180  Q
    |||||||||||||  ||||||||||| || |||||||| || ||||||||||||||||||||    
T  2921387 cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat 2921448  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 36988682 - 36988583
Alignment:
Q  99 gattatccttcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccctc 198  Q
    ||||||| || ||||| || |||||||| |||| |||||| ||||| || || ||||| || |||||||||||||||||||| || ||||||| ||||||    
T  36988682 gattatcttttgtagggattcgatcaaggagtaaggaccacgagaacgccaccactttcgatggagccggactcttccaaattaaagagaaaatcccctc 36988583  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 4641205 - 4641294
Alignment:
Q  108 tcgtaggaatacgatcaagaagtatggaccaagagaatgcgactactttggaaggagccggactcttccaaatcaaggagaaaaccccct 197  Q
    |||| |||||||||||||| |||| |||| | ||||| || ||||| || || ||| |||||||||||||||| || || |||| |||||    
T  4641205 tcgtcggaatacgatcaaggagtaaggacaatgagaacgccactacctttgatggacccggactcttccaaattaaagaaaaaaacccct 4641294  T

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