View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20903_low_1 (Length: 300)
Name: NF20903_low_1
Description: NF20903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20903_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 17443558 - 17443285
Alignment:
| Q |
18 |
gctttcttgacacccaaccatttttcttgatggcttcaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17443558 |
gctttcttgacacccaaccatttttcttgatggcttcaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgt |
17443459 |
T |
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| Q |
118 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443458 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
17443359 |
T |
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| Q |
218 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443358 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
17443285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 4873285 - 4873558
Alignment:
| Q |
18 |
gctttcttgacacccaaccatttttcttgatggcttcaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4873285 |
gctttcttgacacccaaccatttttcttgatggcttcaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgt |
4873384 |
T |
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| Q |
118 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873385 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
4873484 |
T |
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| Q |
218 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873485 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
4873558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 3058642 - 3058915
Alignment:
| Q |
18 |
gctttcttgacacccaaccatttttcttgatggcttcaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3058642 |
gctttcttgacacccaaccatttttcttgatggctttaaacaatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgt |
3058741 |
T |
|
| Q |
118 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058742 |
gaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatg |
3058841 |
T |
|
| Q |
218 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058842 |
agataccacagtgagcaagttgccaagagagctaaggctcttaccatccttcactctgctgtgaatgatgatgt |
3058915 |
T |
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