View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_high_14 (Length: 238)
Name: NF20904_high_14
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33107495 - 33107716
Alignment:
| Q |
1 |
gttttaagcctagcatagctcataaagtttagtgatatattcctcatttccctatgcatgtcacctactaaaaccaacattgaccattttccaagtattc |
100 |
Q |
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| T |
33107495 |
gttttaagcctagcatagctcataaagtttagtgatatattcctcatttccctatgcatgtcacctactaaaaccaacattgaccattttccaagtattc |
33107594 |
T |
|
| Q |
101 |
caccaatgctttttggatagctacactcaaacaattttccatcattttgtaatatgaacctattcaattctgcatctgctgatacaatagctggtcctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33107595 |
caccaatgctttttggatagctacactcaaacaattttccatcattttgtaatatgaacctattcaattctgcatctgctgatacaatagctggccctcc |
33107694 |
T |
|
| Q |
201 |
aaacaaatttgacttgtaaatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33107695 |
aaacaaatttgacttgtaaatt |
33107716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 7618338 - 7618120
Alignment:
| Q |
5 |
taagcctagcatagctcataaagtttagtgatatattcctcatttccctatgcatgtcacctactaaaaccaacattgaccattttccaagtattccacc |
104 |
Q |
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|||||||||||| | || ||| || ||||||||||| | ||| || |||||||||||||| || ||||||||||| |||||||| |||||||||||||| |
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| T |
7618338 |
taagcctagcatgacacaaaaaattgagtgatatattacgcatgtctctatgcatgtcaccaaccaaaaccaacatagaccatttcccaagtattccacc |
7618239 |
T |
|
| Q |
105 |
aatgctttttggatagctacactcaaacaattttccatcattttgtaatatgaacctattcaattctgcatctgctgatacaatagctggtcctccaaac |
204 |
Q |
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|||||| | ||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||| || || | |||||| |||||| |
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| T |
7618238 |
aatgctactaggataactgcactcaaataatttcccttcattttgtaatatgaacctattcaatcctgcatctgctgaaactattgttggtccaccaaac |
7618139 |
T |
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| Q |
205 |
aaatttgacttgtaaattt |
223 |
Q |
| |
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|| ||||| |||||||||| |
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| T |
7618138 |
aagtttgatttgtaaattt |
7618120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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