View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_high_3 (Length: 595)
Name: NF20904_high_3
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 173 - 377
Target Start/End: Complemental strand, 5656840 - 5656632
Alignment:
| Q |
173 |
ccatgaacatgcccaaaaagatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaactaaatgaaaaggaactga |
272 |
Q |
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| T |
5656840 |
ccatgaacatgcccaaaaagatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaacaaaatgaaaaggaactga |
5656741 |
T |
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| Q |
273 |
caaaaaatatgcactccaag----nnnnnnnctcatgtgttacttttggttttggtaacaactcgatcctgccacctttgattaatcaaaccttagtcca |
368 |
Q |
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| T |
5656740 |
caaagaatatgcactccaagaaaaaaaaaaactcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtcca |
5656641 |
T |
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| Q |
369 |
cgcaaacaa |
377 |
Q |
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| T |
5656640 |
cgcaaacaa |
5656632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 437 - 581
Target Start/End: Complemental strand, 5656585 - 5656441
Alignment:
| Q |
437 |
atatgcataagaaattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcaaccttag |
536 |
Q |
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| T |
5656585 |
atatgcataagatattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcagccttag |
5656486 |
T |
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| Q |
537 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggtttt |
581 |
Q |
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| T |
5656485 |
ttggatgtatttcaacccttttgtttgttttcatgttgtggtttt |
5656441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 5657000 - 5656873
Alignment:
| Q |
11 |
aaaggatatcaaaacttttatagctcctctcatatccttaatcttatacattatgacnnnnnnntatacttaaaaaggaaactttaatgaaagaatccca |
110 |
Q |
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| T |
5657000 |
aaaggatatcaaaacttttatagctcctctcatatccttaatcttatacattatgacaaaaaa-tatacttaaaaaggaaactttaatgaaagaatccca |
5656902 |
T |
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| Q |
111 |
atttttggatatgacagtagaaaatatga |
139 |
Q |
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| T |
5656901 |
atttttggatatgacagtagaaaatatga |
5656873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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