View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20904_high_5 (Length: 444)
Name: NF20904_high_5
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 43990733 - 43990320
Alignment:
| Q |
1 |
aacctacctatccattgagtgatcgctcacgttgtcatgacaaaatctgcaagtaaataacttgccacagcatgcagctcgaagcttgcaatttctctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43990733 |
aacctacctatccattgagtgatcgctcacgttgtcatgacaaaatctgcaagtaaataacttgccacagcatgcagctcgaagcttgcaatttctctta |
43990634 |
T |
|
| Q |
101 |
tagtgctcacacccaaatacaagttctcctgggtcccgaaatgatggtgagtgtccttctattttgaccccgttagatgatccttcagatggaggtttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43990633 |
tagtgctcacacccaaatacaagttctcctgggtcccgaaatgatggtgagtgtccttctattttgaccccgttagatgatccttcagatggaggtttag |
43990534 |
T |
|
| Q |
201 |
gtgatttctgctgggcagctatccaacgactagaagacaaaaataactaatcaacaattggagcttggtgacaataggtaaagtccaatcaaataaatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43990533 |
gtgatttctgctgggcagctatccaacgactagaatacaaaaataactaatcaacaattggagcttggtgacaataggtaaaatccaatcaaataaatat |
43990434 |
T |
|
| Q |
301 |
agataattatggcccatcaaataataaaaccagaaaaatctggacaccggaagcaaccttgtcaaaagattctgcacaagatatgcctttctcctaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43990433 |
agataattatggcccatcaaataataaaatcagagaattctggacaccggaagcaaccttgtcaaaagattctgcacaagatatgcctttctcctaggat |
43990334 |
T |
|
| Q |
401 |
caagatttgagtca |
414 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
43990333 |
caagagttgagtca |
43990320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Original strand, 43990292 - 43990329
Alignment:
| Q |
407 |
ttgagtcagagttccggaaggttcatcgtgactcaact |
444 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
43990292 |
ttgagtcagagatccggaaggtttatcgtgactcaact |
43990329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 31311110 - 31310992
Alignment:
| Q |
31 |
gttgtcatgacaaaatctgcaagtaaataacttgccacagcatgcagctcgaagcttgcaatttctcttatagtgctcacacccaaatacaagttctcct |
130 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| || |||||||||| |||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
31311110 |
gttgtcatgacaaaatctgcatgtaaataacttctcacaacaagcagctcgaactttgcaatttctcttatagtgctcacaaccaaatacttttttctct |
31311011 |
T |
|
| Q |
131 |
gggtcccgaaatgatggtg |
149 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
31311010 |
gggtcccgaaatgaaggtg |
31310992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 31310799 - 31310734
Alignment:
| Q |
349 |
ggaagcaaccttgtcaaaagattctgcacaagatatgcctttctcctaggatcaagatttgagtca |
414 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||| |
|
|
| T |
31310799 |
ggaatcaaccttgtcatgagattctgcacaaggtatgcctttcttcttggatcaagggttgagtca |
31310734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University