View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_high_6 (Length: 374)
Name: NF20904_high_6
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 126 - 370
Target Start/End: Complemental strand, 33107313 - 33107069
Alignment:
| Q |
126 |
tgcacgaagttcaccttcaatttgatggccaaacaaatcatgagtttggatccagggaatcttgagacagaacagttgaaaaaagagtatgtctgtttca |
225 |
Q |
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| T |
33107313 |
tgcatgaagttcaccttcaatttgatggccaaacaaatcatgagtttggatccagggaatcttgagacagaacagttgaaaaaagagtatgtctgtttca |
33107214 |
T |
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| Q |
226 |
tgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacagaaaagcattaaaggtaataataaatnnnnnnntagataacattaaatattt |
325 |
Q |
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| T |
33107213 |
tgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacagaaaagcattaaaggtaataataaaaaaaaaaatagataacattaaatattt |
33107114 |
T |
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| Q |
326 |
gtttgaattgacggtaaatttgacataattacagccgcacgtaat |
370 |
Q |
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| T |
33107113 |
gtttgaattgacggtaaatttgacataattacagccgcacgtaat |
33107069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33107438 - 33107396
Alignment:
| Q |
1 |
aaaattgtacattttcagctcaagatgaagcaaaaaaggtaag |
43 |
Q |
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| T |
33107438 |
aaaattgtacattttcagctcaagatgaagcaaaaaaggtaag |
33107396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 7618595 - 7618678
Alignment:
| Q |
207 |
aaagagtatgtctgtttcatgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacagaaaagcattaaaggta |
290 |
Q |
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| T |
7618595 |
aaagagtatgttacttttatgaaaggtgttgtatcagcaccattgaattttcctggaactgcatactggagagcattaaaggta |
7618678 |
T |
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