View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_low_10 (Length: 273)
Name: NF20904_low_10
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 30924922 - 30925193
Alignment:
| Q |
1 |
ctatttggataaccttctcttgaaactaaaaagttacattaaaataatcttgcaacaagtatgaattatttgaagcaacaacttctattatataagctgc |
100 |
Q |
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| T |
30924922 |
ctatttggataaccttctcttgaaactaaaaagttgcattaaaataatcttgcaacaagtatgaattatttgaagcaacaatatctattatataagctgc |
30925021 |
T |
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| Q |
101 |
gaatactttctccatataagnnnnnnnnnagcctctcgtttaaccttcttcatgtatttatgaacttctaaagattttcttgtgattaaagaatcttgga |
200 |
Q |
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| T |
30925022 |
gaatactttcttcatatcagtttttttttagtctctcgtttaaccttcttcatgtatttatgaacttctaaagattttcttgtgattaaagaatctt-ga |
30925120 |
T |
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| Q |
201 |
agttatttaaatcaagcaacttgcatatgggannnnnnnagtcggagactaagaattgtaattttgtcgctct |
273 |
Q |
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| T |
30925121 |
agttatttaaatcaagcaacttgcatatgggatttttttaggcgatgactaagaattgtaattttgtctctct |
30925193 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 24310983 - 24311067
Alignment:
| Q |
139 |
tttaaccttcttcatgtatttatgaacttctaaagattttcttgtgattaaag-aatcttggaagttatttaaatcaagcaactt |
222 |
Q |
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| T |
24310983 |
tttaacctttttcatgtatttatgaacttataatgattttctcgtgattaaagaaatcttgaaggttatttaaataaagaaactt |
24311067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2869197 - 2869249
Alignment:
| Q |
138 |
gtttaaccttcttcatgtatttatgaacttctaaagattttcttgtgattaaa |
190 |
Q |
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| T |
2869197 |
gtttaacctttttcatgtatttatgaacttataaagattttctcgtgattaaa |
2869249 |
T |
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