View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20904_low_12 (Length: 261)

Name: NF20904_low_12
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20904_low_12
NF20904_low_12
[»] chr3 (2 HSPs)
chr3 (16-246)||(11645844-11646074)
chr3 (14-246)||(21389287-21389519)
[»] chr7 (3 HSPs)
chr7 (16-246)||(14972083-14972313)
chr7 (16-246)||(15401559-15401789)
chr7 (33-124)||(9688249-9688340)
[»] chr2 (1 HSPs)
chr2 (35-246)||(19391880-19392088)
[»] chr4 (2 HSPs)
chr4 (39-245)||(28801727-28801933)
chr4 (33-124)||(13554626-13554717)
[»] chr6 (4 HSPs)
chr6 (22-135)||(24000145-24000258)
chr6 (22-135)||(23998781-23998894)
chr6 (22-135)||(23999463-23999576)
chr6 (22-122)||(23986557-23986657)
[»] chr5 (1 HSPs)
chr5 (33-246)||(20065184-20065397)
[»] chr1 (1 HSPs)
chr1 (33-246)||(18578537-18578750)
[»] chr8 (1 HSPs)
chr8 (35-202)||(14757464-14757631)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 11646074 - 11645844
Alignment:
Q  16 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  11646074 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctatggaccatgagaaaagactcagatggaagaggttttg 11645975  T
Q  116 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645974 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 11645875  T
Q  216 tttagttcttgaatgtaagactgggtttttg 246  Q
    |||||| ||||||||||||||||||||||||    
T  11645874 tttagtccttgaatgtaagactgggtttttg 11645844  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 21389519 - 21389287
Alignment:
Q  14 agaatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttt 113  Q
    |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||  ||||||||||||||||||| || |||||    
T  21389519 agaataaataaaaagaagctcttgcttatttaaagcaagaggtatccaagatacctaatttcctacggattttgagaaaagactcggatggtagtggttt 21389420  T
Q  114 tgtaaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaa 213  Q
    |||||||| |||| |||| ||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||  |||| ||||| | |||| ||  |    
T  21389419 tgtaaaaaagtcagcaagctgacttttagtgtcaacgtactcgaacgttacatccttcttttcaacatgatccctgaggaagtgatgtcaaatctcagta 21389320  T
Q  214 tgtttagttcttgaatgtaagactgggtttttg 246  Q
    || |||||  |||||||||| ||||| ||||||    
T  21389319 tgcttagtctttgaatgtaacactggatttttg 21389287  T

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Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 14972083 - 14972313
Alignment:
Q  16 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 115  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||    
T  14972083 aataaataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttg 14972182  T
Q  116 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 215  Q
    | ||||| ||  |||| |||| |||| ||||||||||| | || ||||||||||||||||||||||| |  ||| |||||||||| || ||| ||| ||     
T  14972183 tgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgtatctcaatata 14972282  T
Q  216 tttagttcttgaatgtaagactgggtttttg 246  Q
    |||||| ||||||||||||||| | ||||||    
T  14972283 tttagtccttgaatgtaagactagttttttg 14972313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 15401559 - 15401789
Alignment:
Q  16 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 115  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||    
T  15401559 aataaataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttg 15401658  T
Q  116 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 215  Q
    | ||||| ||  |||| |||| |||| ||||||||||| | || ||||||||||||||||||||||| |  ||| |||||||||| || ||| ||| ||     
T  15401659 tgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgtatctcaatata 15401758  T
Q  216 tttagttcttgaatgtaagactgggtttttg 246  Q
    |||||| ||||||||||||||| | ||||||    
T  15401759 tttagtccttgaatgtaagactagttttttg 15401789  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 9688340 - 9688249
Alignment:
Q  33 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgt 124  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||  ||  |||||||| | |||||||| || ||||||||||||||||    
T  9688340 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgt 9688249  T

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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 19391880 - 19392088
Alignment:
Q  35 ttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttg 134  Q
    |||||||||||| |||||||||||| |||||||||||| |||||| |||| |||| ||||| |||||||| || |||||| ||||||||||| |||| ||    
T  19391880 ttgcttatttaaagcaagaggtatctaagatacctagt-ccctacagatcttgaggaaagaatcggatggtagcggttttataaaaatgtcagcaagatg 19391978  T
Q  135 acttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgtaag 234  Q
    ||  ||| ||||||||||| ||||  ||||||||||||| |||||  |||||||| |||||| |||||||||| |||  ||||||||||||||||||||     
T  19391979 acacttagtgtcaacatactcaaaaattacatccttcttatcaac--gatccctaaggaaattatgccgaatctcaatgtgtttagttcttgaatgtaaa 19392076  T
Q  235 actgggtttttg 246  Q
    ||||||||||||    
T  19392077 actgggtttttg 19392088  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 28801727 - 28801933
Alignment:
Q  39 ttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttgactt 138  Q
    |||||||| | |||||||||| | |||||||||||||||||||||| |  |||| || |||||||| |||||||||||| |||||||| |||||||||      
T  28801727 ttatttaaagtaagaggtatctatgatacctagttccctacggatcttacgaaaggagtcggatggtagaggttttgtagaaatgtcagcaagttgacac 28801826  T
Q  139 ttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgtaagactg 238  Q
    ||| ||||||||||| | || || || |||||||||||||||||||||||| |||||||||   ||||  |||  ||||||||||||||||||||| |||    
T  28801827 ttagtgtcaacatactcgaaagtcacgtccttcttttcaacatgatccctaaggaaatgatattgaatttcaatgtgtttagttcttgaatgtaagtctg 28801926  T
Q  239 ggttttt 245  Q
    | |||||    
T  28801927 gattttt 28801933  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 13554717 - 13554626
Alignment:
Q  33 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgt 124  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||  ||  |||||||| | |||||||| || ||||||||||||||||    
T  13554717 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgt 13554626  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 24000258 - 24000145
Alignment:
Q  22 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  24000258 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 24000159  T
Q  122 tgtcatcaagttga 135  Q
    | ||| ||||||||    
T  24000158 tatcagcaagttga 24000145  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 23998894 - 23998781
Alignment:
Q  22 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 121  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  23998894 taagaagaagcacttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 23998795  T
Q  122 tgtcatcaagttga 135  Q
    | ||| ||||||||    
T  23998794 tatcagcaagttga 23998781  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 23999576 - 23999463
Alignment:
Q  22 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||  ||||||||||||    
T  23999576 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggagttttgtaaaaa 23999477  T
Q  122 tgtcatcaagttga 135  Q
    | ||| ||||||||    
T  23999476 tatcagcaagttga 23999463  T

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Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 23986657 - 23986557
Alignment:
Q  22 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  23986657 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 23986558  T
Q  122 t 122  Q
    |    
T  23986557 t 23986557  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 246
Target Start/End: Original strand, 20065184 - 20065397
Alignment:
Q  33 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagt 132  Q
    |||||||||||||| || ||| ||||| ||||||  | |||||||| | ||| |||| ||||| |||||||| |   ||||||||||||||||| |||||    
T  20065184 tcttgcttatttaaagctagatgtatctaagatatatggttccctatgaatcttgaggaaagagtcggatggtatcagttttgtaaaaatgtcagcaagt 20065283  T
Q  133 tgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgta 232  Q
    ||||  ||  |||||||||   |||| | |||||||||||||||||||| ||||||| |||||||||  |||||| ||| ||||||||||||||||| ||    
T  20065284 tgacactttgtgtcaacatgatcaaaaggtacatccttcttttcaacataatccctaaggaaatgatatcgaatctcaatatgtttagttcttgaatata 20065383  T
Q  233 agactgggtttttg 246  Q
    | | ||||||||||    
T  20065384 aaattgggtttttg 20065397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 246
Target Start/End: Original strand, 18578537 - 18578750
Alignment:
Q  33 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagt 132  Q
    |||||||| || || ||||| |||||| ||||||| |||||||||||  ||| | || ||||| || ||||| | ||||| ||||||| ||||| |||||    
T  18578537 tcttgctttttgaaagcaagtggtatctaagatacttagttccctacatatctttaggaaagagtcagatggtaaaggttatgtaaaactgtcagcaagt 18578636  T
Q  133 tgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgta 232  Q
    ||||  ||| |||||| |||  |||| || || || ||||||||||||  |||| || |||||||||||| |||| |||  |||||||||||||||||||    
T  18578637 tgacacttagtgtcaaaatattcaaaagtcacgtcattcttttcaacaccatccataaggaaatgatgccaaatctcaatgtgtttagttcttgaatgta 18578736  T
Q  233 agactgggtttttg 246  Q
    | ||| ||||||||    
T  18578737 aaactaggtttttg 18578750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 14757464 - 14757631
Alignment:
Q  35 ttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttg 134  Q
    |||||||||||| ||||| |||||||| |||||||||||| ||||||||  | |||||||| ||||||||||| |||||  ||||||| |   |||||||    
T  14757464 ttgcttatttaaagcaagtggtatccatgatacctagttcgctacggattttaagaaaagagtcggatggaagtggtttgctaaaaatatttgcaagttg 14757563  T
Q  135 acttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgcc 202  Q
    || |||  |||||| |||| ||||  ||||||| |||||||| || ||| |||||   ||||||||||    
T  14757564 acatttggtgtcaatatactcaaaaattacatcattcttttctacgtgaaccctaaaaaaatgatgcc 14757631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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