View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_low_2 (Length: 793)
Name: NF20904_low_2
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 328 - 538
Target Start/End: Original strand, 29416262 - 29416472
Alignment:
| Q |
328 |
tttttgttggaagagaaggcaaattaaaacaaacactaaggtaggtgcctcctttagtgatactttgatgagaatggaacttcacattggttggaaaatg |
427 |
Q |
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| T |
29416262 |
tttttgttggaagagaaggcaaattaaaacaaacactaaggtaggtgcctcctttagtgatactttgatgagaatggaacttcacattggttggaaaatg |
29416361 |
T |
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| Q |
428 |
atagaacagtaaaccagtaaaaacagaactgtaatcaaatcttcacttataaaaagaaaatgatactttcatgagacagatgacattaacagatgcacaa |
527 |
Q |
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| T |
29416362 |
atagaacagtaaaccagtaaaaacagaactgtaatcaaatcttcacttataaaaagaaaatgatactttcatgagacagatgacattaacagatgcacaa |
29416461 |
T |
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| Q |
528 |
gaaacagatga |
538 |
Q |
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| T |
29416462 |
gaaacagatga |
29416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 29415951 - 29416162
Alignment:
| Q |
17 |
aataactgatctggactgaccgatatgaaatgaactgccgagattcaattgtgtgtgaaacttctgagatccacattgcgtatacaaagccgctaggatt |
116 |
Q |
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| T |
29415951 |
aataactgatctggactgaccgatatgaaatgaactgccgagattcaattgtgtgtgaaacttctgagatccacattgcgtatacaaagcctctaggatt |
29416050 |
T |
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| Q |
117 |
gtagattgatgactgagattcgctattggtgaattcacgactgcagccaagccaatcttaggcccttgtaactaaagttgaggattacataaatagttta |
216 |
Q |
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| T |
29416051 |
gtagattgatgactgagattcgctattggtgaattcacgactgcagccaagccaatcttaggcccttgtaactaaagttgaggattacataaatagttta |
29416150 |
T |
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| Q |
217 |
attcagtggcac |
228 |
Q |
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| T |
29416151 |
attcagtggcac |
29416162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 575 - 769
Target Start/End: Original strand, 29416470 - 29416664
Alignment:
| Q |
575 |
tgattctacctcagtaacataatctaataatgacgtaaaattaaacatccttgctcaatgacacaaatagttagaaacacatcctagcacaagatgctca |
674 |
Q |
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| T |
29416470 |
tgattctacctcagtaacataatctaataatgacgtaaaattaaacatccttgctcaatgacacaaatagttagaaacacatcctagcacaagatgctca |
29416569 |
T |
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| Q |
675 |
agatccaaagtgcaacccagaaaaaagcctattaaatactttttccgccaaaaggaagaaggttttctttatgaattgttatcttacaaagactc |
769 |
Q |
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| T |
29416570 |
agatccaaagtgaaacccagaaaaaagcctattaaatactttttcctccaaaaggaagaaggttttctttatgaattgctatcttacaaagactc |
29416664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 531 - 758
Target Start/End: Complemental strand, 24655971 - 24655731
Alignment:
| Q |
531 |
acagatgacattaacagtccattgtattctctgcatcagtacattgattctacctcagtaacataatctaataatgacgtaaaattaaacatccttgctc |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
24655971 |
acagatgacattaacagtccattgtattctctgcatcagtacattgattctacctcagtaacataatccaataatgacgtaaaattaaacatcctagttc |
24655872 |
T |
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| Q |
631 |
aatgaca-----------caaatagttagaaacacatcctagcacaagatgctcaagatccaaagtgcaacccagaaa--aaagcctattaaatactttt |
717 |
Q |
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| T |
24655871 |
aatgacacaaacgtaggccaaatagttagaaacacatcttagcacaagatgctcaagatccaaagtgaaacccaaaaaacaatgcctattaaatactttt |
24655772 |
T |
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| Q |
718 |
tccgccaaaaggaagaaggttttctttatgaattgttatct |
758 |
Q |
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| T |
24655771 |
tccttcaaaaggaagaaggttttccttatgaattgttatct |
24655731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 426 - 519
Target Start/End: Complemental strand, 24656048 - 24655955
Alignment:
| Q |
426 |
tgatagaacagtaaaccagtaaaaacagaactgtaatcaaatcttcacttataaaaagaaaatgatactttcatgagacagatgacattaacag |
519 |
Q |
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| T |
24656048 |
tgatagaacagtaaacaagtaaaaacagaactgtaatcaaaccttcacttataaaaagaaaatgatactttcatgagacagatgacattaacag |
24655955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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